field name | type | required | description | examples | notes |
---|---|---|---|---|---|
id | integer | primary key, internal to DB only (not a foreign key) | 1 | auto-incrementing | |
source_system | string | name of source system in which biomaterial's primary data is stored | "Labmatrix", "Lab Samples", "Staudt" | we will then need to come up with a mapping for all the non-central systems, and enforce them using that name when uploading | |
source_id | string | ID of biomaterial within the source system | (UUID), "AZD3-PL-0024-002" | ||
patient_id | string | ID of source patient from whom biomaterial was collected | "1234567", "SS08-145" | ||
patient_id_source | string | source of the patient ID | "CRIS", "SoftPath" | ||
collected_datetime | datetime | date & time the specimen was collected | any vagaries in data (e.g., estimate, or date-only) are handled in source system, rather than here | ||
sample_type | string | the type of sample | "blood", "serum", "prostate", "skin" | provide a catch-all "unknown" option? | |
status | string | the current status of the sample | "in inventory", "transferred", "exhausted", "destroyed" | if required, we will need a generic "unknown" option | |
status_datetime | datetime | date & time of the currently-recorded status | |||
created | datetime | date/time the record was created | |||
created_by | string | username of creator | |||
last_modified | datetime | date/time the record was last modified | |||
last_modified_by | string | username of modifier |