#! /bin/tcsh
#SBATCH --job-name="clean pdb"

cd $SLURM_SUBMIT_DIR

/data/PNAI/yuba/scripts/rna2d3d/refine/clean_pdb.py refine_1_0_0.pdb
/data/PNAI/yuba/scripts/rna2d3d/refine/pdb_renumber.sh atoms refine_final1.pdb > refine_final.pdb
rm -rf refine_final1.pdb

#sbatch --cpus-per-task=2 --threads-per-core=2 --mem=4g --time=1-00:00:00 --partition=ccr qsub1.sh
