LOCUS pCRSVF_a_c 7076 bp ss-DNA circular SYN 02-Mar-2013 DEFINITION -. ACCESSION - KEYWORDS -. SOURCE -. FEATURES Location/Qualifiers enhancer 1..659 /label=CMV\enhancer /note="CMV enhancer" /note="/vntifkey=""9""" misc_feature 669..750 /label=CMV\promoter\core /note="CMV promoter core" /note="/vntifkey=""21""" intron 890..1022 /label=Intron_1 /note="intron" /note="/vntifkey=""15""" intron 989..994 /label=Intron_2 /note="lariat branch-point" /note="/vntifkey=""15""" misc_feature 1067..1085 /label=Misc_Feature_2 /note="T7 promoter" /note="/vntifkey=""21""" CDS 1097..2830 /label=RSV\F(a)cm /note="/vntifkey=""4""" modified_base 1406 /label=C\-->\G /note="/vntifkey=""23""" modified_base 2158 /label=C\-->\T /note="/vntifkey=""23""" modified_base 2161 /label=C\-->\G /note="/vntifkey=""23""" modified_base 2164 /label=G\-->\A /note="/vntifkey=""23""" modified_base 2237 /label=A\-->\G /note="/vntifkey=""23""" modified_base 2239 /label=C\-->\G /note="/vntifkey=""23""" modified_base 2441 /label=A\-->\G /note="/vntifkey=""23""" misc_feature complement(2848..2866) /label=Misc_Feature_3 /note="T3 promoter" /note="/vntifkey=""21""" polyA_signal 2875..3096 /label=PolyA_Signal_1 /note="SV40 late polyA" /note="/vntifkey=""25""" rep_origin 3191..3646 /label=F1\Ori /note="F1 Ori" /note="/vntifkey=""33""" promoter 3708..3754 /label=SV40\Promoter /note="SV40 Promoter" /note="/vntifkey=""30""" frag 3755..4877 /label=Misc_Feature_4 /note="Unknown feature type:frag 48 to 1170 of p?SELP" /note="/vntifkey=""21""" promoter 3755..4126 /label=SV40\promoter\ /note=" [Split]" misc_feature complement(3755..3790) /label=Misc_Feature_5 /note=" [Split]" intron complement(3755..3759) /label=Intron_3 /note=" [Split]" misc_feature 3782 /label=Misc_Feature_6 /note="begin homology to pCDNA3.1 SV40" /note="/vntifkey=""21""" enhancer 3804..3946 /label=Enhancer_2 /note="SV40 enhancer elements" /note="/vntifkey=""9""" misc_feature 3804 /label=Misc_Feature_7 /note="begin homology to EGFP-N1 SV40" /note="/vntifkey=""21""" misc_feature 3951..4014 /label=Misc_Feature_8 /note="SV40 21bp repeats" /note="/vntifkey=""21""" rep_origin 3971..4106 /label=SV40\Ori /note="SV40 Ori" /note="/vntifkey=""33""" mRNA 4020..4026 /label=mRNA_1 /note="early-late transcription startpoints" /note="/vntifkey=""54""" misc_feature 4027..4033 /label=Misc_Feature_9 /note="SV40 promoter core" /note="/vntifkey=""21""" CDS 4038..4109 /label=CDS_2 /note="SELP protein (ATG dead)" /note="/vntifkey=""4""" mutation 4040 /label=Mutation_1 /note="G->A kills SELP ATG" /note="/vntifkey=""62""" mRNA 4060..4066 /label=mRNA_2 /note="early-early transcription start points" /note="/vntifkey=""54""" CDS 4151..4870 /label=EGFP /note="EGFP" /note="/vntifkey=""4""" polyA_signal 4925..4973 /label=PolyA_Signal_2 /note="synthetic polyA" /note="/vntifkey=""25""" CDS 5384..6244 /label=AmpR /note="AmpR" /note="/vntifkey=""4""" rep_origin 6393..7063 /label=Ori /note="Ori" /note="/vntifkey=""33""" BASE COUNT 1786 A 1892 C 1779 G 1617 T 0 OTHER ORIGIN ? 1 TCAATATTGG CCATTAGCCA TATTATTCAT TGGTTATATA GCATAAATCA ATATTGGCTA 61 TTGGCCATTG CATACGTTGT ATCTATATCA TAATATGTAC ATTTATATTG GCTCATGTCC 121 AATATGACCG CCATGTTGGC ATTGATTATT GACTAGTTAT TAATAGTAAT CAATTACGGG 181 GTCATTAGTT CATAGCCCAT ATATGGAGTT CCGCGTTACA TAACTTACGG TAAATGGCCC 241 GCCTGGCTGA CCGCCCAACG ACCCCCGCCC ATTGACGTCA ATAATGACGT ATGTTCCCAT 301 AGTAACGCCA ATAGGGACTT TCCATTGACG TCAATGGGTG GAGTATTTAC GGTAAACTGC 361 CCACTTGGCA GTACATCAAG TGTATCATAT GCCAAGTCCG CCCCCTATTG ACGTCAATGA 421 CGGTAAATGG CCCGCCTGGC ATTATGCCCA GTACATGACC TTACGGGACT TTCCTACTTG 481 GCAGTACATC TACGTATTAG TCATCGCTAT TACCATGGTG ATGCGGTTTT GGCAGTACAC 541 CAATGGGCGT GGATAGCGGT TTGACTCACG GGGATTTCCA AGTCTCCACC CCATTGACGT 601 CAATGGGAGT TTGTTTTGGC ACCAAAATCA ACGGGACTTT CCAAAATGTC GTAACAACTG 661 CGATCGCCCG CCCCGTTGAC GCAAATGGGC GGTAGGCGTG TACGGTGGGA GGTCTATATA 721 AGCAGAGCTC GTTTAGTGAA CCGTCAGATC ACTAGAAGCT TTATTGCGGT AGTTTATCAC 781 AGTTAAATTG CTAACGCAGT CAGTGCTTCT GACACAACAG TCTCGAACTT AAGCTGCAGT 841 GACTCTCTTA AGGTAGCCTT GCAGAAGTTG GTCGTGAGGC ACTGGGCAGG TAAGTATCAA 901 GGTTACAAGA CAGGTTTAAG GAGACCAATA GAAACTGGGC TTGTCGAGAC AGAGAAGACT 961 CTTGCGTTTC TGATAGGCAC CTATTGGTCT TACTGACATC CACTTTGCCT TTCTCTCCAC 1021 AGGTGTCCAC TCCCAGTTCA ATTACAGCTC TTAAGGCTAG AGTACTTAAT ACGACTCACT 1081 ATAGGCTAGC CTCGACGCCA CCATGGAGCT GCTGATCCTG AAGGCCAACG CCATCACCAC 1141 CATCCTGACC GCCGTGACCT TCTGCTTCGC CAGCGGCCAG AATATCACCG AGGAGTTCTA 1201 CCAGAGCACC TGTAGCGCCG TGTCCAAGGG CTACCTGAGC GCCCTGAGAA CCGGCTGGTA 1261 CACCAGCGTG ATCACCATCG AGCTGTCCAA CATCAAGGAA AACAAGTGTA ACGGCACCGA 1321 CGCCAAGGTG AAGCTGATCA AGCAGGAGCT GGACAAGTAC AAGAACGCCG TGACCGAGCT 1381 GCAGCTGCTG ATGCAGAGCA CCCCCGCCAC CAACAACAGA GCCAGGCGCG AGCTGCCCCG 1441 GTTCATGAAC TACACCCTGA ACAACGCCAA GAAAACCAAC GTGACCCTGA GCAAGAAGCG 1501 GAAGCGGAGA TTCCTGGGCT TCCTGCTGGG AGTGGGCAGC GCCATCGCCA GCGGAGTGGC 1561 CGTGTCTAAG GTGCTGCACC TGGAGGGCGA GGTGAACAAG ATCAAGAGCG CCCTGCTGTC 1621 CACCAACAAG GCCGTGGTGT CCCTGAGCAA CGGCGTGTCC GTGCTGACCA GCAAGGTGCT 1681 GGATCTGAAG AACTACATCG ACAAGCAGCT GCTGCCCATC GTGAACAAGC AGAGCTGCTC 1741 CATCAGCAAC ATCGAGACCG TGATCGAGTT CCAGCAGAAG AACAACCGGC TGCTGGAGAT 1801 CACCAGGGAG TTCAGCGTGA ACGCCGGCGT GACCACCCCT GTGAGCACCT ACATGCTGAC 1861 CAACAGCGAG CTGCTGTCCC TGATCAATGA CATGCCCATC ACCAACGACC AGAAAAAGCT 1921 GATGAGCAAC AACGTGCAGA TTGTGAGGCA GCAGAGCTAC AGCATCATGA GCATCATCAA 1981 GGAAGAGGTG CTGGCCTACG TGGTGCAGCT GCCCCTGTAC GGCGTGATCG ATACCCCTTG 2041 CTGGAAGCTG CACACCAGCC CTCTGTGTAC CACCAACACC AAGGAGGGCA GCAACATCTG 2101 CCTGACCAGG ACCGATAGAG GCTGGTACTG TGACAATGCC GGCAGCGTGT CCTTCTTTCC 2161 GCAAGCCGAG ACCTGTAAGG TGCAGAGCAA CCGGGTGTTC TGTGACACCA TGAACAGCCT 2221 GACCCTGCCC AGCGAGGTGA ACCTGTGTAA CGTGGACATC TTCAACCCCA AGTACGACTG 2281 TAAGATCATG ACCTCCAAGA CCGACGTGTC CAGCAGCGTG ATTACCAGCC TGGGCGCCAT 2341 CGTGTCCTGC TACGGCAAGA CCAAGTGTAC CGCCAGCAAC AAGAACCGGG GGATCATCAA 2401 GACCTTCAGC AACGGCTGTG ACTACGTGTC CAACAAGGGC GTGGACACCG TGTCTGTGGG 2461 CAACACACTG TACTACGTGA ATAAGCAGGA GGGCAAGAGC CTGTACGTGA AGGGCGAGCC 2521 CATCATCAAC TTCTACGACC CCCTGGTGTT CCCTAGCGAC GAGTTCGATG CCAGCATCAG 2581 CCAGGTGAAC GAGAAGATCA ACCAGAGCCT GGCCTTCATC AGGAAGAGCG ACGAGCTGCT 2641 GCACAATGTG AATGCCGGCA AGAGCACCAC CAACATCATG ATCACCACAA TCATCATCGT 2701 GATCATTGTG ATCCTGCTGT CTCTGATTGC TGTGGGCCTG CTGCTGTACT GTAAGGCCAG 2761 ATCCACCCCC GTGACCCTGT CCAAGGACCA GCTGTCCGGC ATCAACAACA TCGCCTTCTC 2821 CAACTGATGA GGATCGGGCG GCCGCTTCCC TTTAGTGAGG GTTAATGCTT CGAGCAGACA 2881 TGATAAGATA CATTGATGAG TTTGGACAAA CCACAACTAG AATGCAGTGA AAAAAATGCT 2941 TTATTTGTGA AATTTGTGAT GCTATTGCTT TATTTGTAAC CATTATAAGC TGCAATAAAC 3001 AAGTTAACAA CAACAATTGC ATTCATTTTA TGTTTCAGGT TCAGGGGGAG ATGTGGGAGG 3061 TTTTTTAAAG CAAGTAAAAC CTCTACAAAT GTGGTAAAAT CCGATAAGGA TCGATCCGGG 3121 CTGGCGTAAT AGCGAAGAGG CCCGCACCGA TCGCCCTTCC CAACAGTTGC GCAGCCTGAA 3181 TGGCGAATGG ACGCGCCCTG TAGCGGCGCA TTAAGCGCGG CGGGTGTGGT GGTTACGCGC 3241 AGCGTGACCG CTACACTTGC CAGCGCCCTA GCGCCCGCTC CTTTCGCTTT CTTCCCTTCC 3301 TTTCTCGCCA CGTTCGCCGG CTTTCCCCGT CAAGCTCTAA ATCGGGGGCT CCCTTTAGGG 3361 TTCCGATTTA GTGCTTTACG GCACCTCGAC CCCAAAAAAC TTGATTAGGG TGATGGTTCA 3421 CGTAGTGGGC CATCGCCCTG ATAGACGGTT TTTCGCCCTT TGACGTTGGA GTCCACGTTC 3481 TTTAATAGTG GACTCTTGTT CCAAACTGGA ACAACACTCA ACCCTATCTC GGTCTATTCT 3541 TTTGATTTAT AAGGGATTTT GCCGATTTCG GCCTATTGGT TAAAAAATGA GCTGATTTAA 3601 CAAAAATTTA ACGCGAATTT TAACAAAATA TTAACGCTTA CAATTTCCTG ATGCGGTATT 3661 TTCTCCTTAC GCATCTGTGC GGTATTTCAC ACCGCATACG CGGATCTGCG CAGCACCATG 3721 GCCTGAAATA ACCTCTGAAA GAGGAACTTG GTTAGGTACC TTCTGAGGCG GAAAGAACCA 3781 GCTGTGGAAT GTGTGTCAGT TAGGGTGTGG AAAGTCCCCA GGCTCCCCAG CAGGCAGAAG 3841 TATGCAAAGC ATGCATCTCA ATTAGTCAGC AACCAGGTGT GGAAAGTCCC CAGGCTCCCC 3901 AGCAGGCAGA AGTATGCAAA GCATGCATCT CAATTAGTCA GCAACCATAG TCCCGCCCCT 3961 AACTCCGCCC ATCCCGCCCC TAACTCCGCC CAGTTCCGCC CATTCTCCGC CCCATGGCTG 4021 ACTAATTTTT TTTATTTATA CAGAGGCCGA GGCCGCCTCG GCCTCTGAGC TATTCCAGAA 4081 GTAGTGAGGA GGCTTTTTTG GAGGCCTAGG CTTTTGCAAA AAGCTTGATT GGGATCCACC 4141 GGTCGCCACC ATGGTGAGCA AGGGCGAGGA GCTGTTCACC GGGGTGGTGC CCATCCTGGT 4201 CGAGCTGGAC GGCGACGTAA ACGGCCACAA GTTCAGCGTG TCCGGCGAGG GCGAGGGCGA 4261 TGCCACCTAC GGCAAGCTGA CCCTGAAGTT CATCTGCACC ACCGGCAAGC TGCCCGTGCC 4321 CTGGCCCACC CTCGTGACCA CCCTGACCTA CGGCGTGCAG TGCTTCAGCC GCTACCCCGA 4381 CCACATGAAG CAGCACGACT TCTTCAAGTC CGCCATGCCC GAAGGCTACG TCCAGGAGCG 4441 CACCATCTTC TTCAAGGACG ACGGCAACTA CAAGACCCGC GCCGAGGTGA AGTTCGAGGG 4501 CGACACCCTG GTGAACCGCA TCGAGCTGAA GGGCATCGAC TTCAAGGAGG ACGGCAACAT 4561 CCTGGGGCAC AAGCTGGAGT ACAACTACAA CAGCCACAAC GTCTATATCA TGGCCGACAA 4621 GCAGAAGAAC GGCATCAAGG TGAACTTCAA GATCCGCCAC AACATCGAGG ACGGCAGCGT 4681 GCAGCTCGCC GACCACTACC AGCAGAACAC CCCCATCGGC GACGGCCCCG TGCTGCTGCC 4741 CGACAACCAC TACCTGAGCA CCCAGTCCGC CCTGAGCAAA GACCCCAACG AGAAGCGCGA 4801 TCACATGGTC CTGCTGGAGT TCGTGACCGC CGCCGGGATC ACTCTCGGCA TGGACGAGCT 4861 GTACAAGTAA AGCGGCCCGA AATGACCGAC CAAGCGACGC CCAACCTGCC ATCACGATGG 4921 CCGCAATAAA ATATCTTTAT TTTCATTACA TCTGTGTGTT GGTTTTTTGT GTGAATCGAT 4981 AGCGATAAGG ATCCGCGTAT GGTGCACTCT CAGTACAATC TGCTCTGATG CCGCATAGTT 5041 AAGCCAGCCC CGACACCCGC CAACACCCGC TGACGCGCCC TGACGGGCTT GTCTGCTCCC 5101 GGCATCCGCT TACAGACAAG CTGTGACCGT CTCCGGGAGC TGCATGTGTC AGAGGTTTTC 5161 ACCGTCATCA CCGAAACGCG CGAGACGAAA GGGCCTCGTG ATACGCCTAT TTTTATAGGT 5221 TAATGTCATG ATAATAATGG TTTCTTAGAC GTCAGGTGGC ACTTTTCGGG GAAATGTGCG 5281 CGGAACCCCT ATTTGTTTAT TTTTCTAAAT ACATTCAAAT ATGTATCCGC TCATGAGACA 5341 ATAACCCTGA TAAATGCTTC AATAATATTG AAAAAGGAAG AGTATGAGTA TTCAACATTT 5401 CCGTGTCGCC CTTATTCCCT TTTTTGCGGC ATTTTGCCTT CCTGTTTTTG CTCACCCAGA 5461 AACGCTGGTG AAAGTAAAAG ATGCTGAAGA TCAGTTGGGT GCACGAGTGG GTTACATCGA 5521 ACTGGATCTC AACAGCGGTA AGATCCTTGA GAGTTTTCGC CCCGAAGAAC GTTTTCCAAT 5581 GATGAGCACT TTTAAAGTTC TGCTATGTGG CGCGGTATTA TCCCGTATTG ACGCCGGGCA 5641 AGAGCAACTC GGTCGCCGCA TACACTATTC TCAGAATGAC TTGGTTGAGT ACTCACCAGT 5701 CACAGAAAAG CATCTTACGG ATGGCATGAC AGTAAGAGAA TTATGCAGTG CTGCCATAAC 5761 CATGAGTGAT AACACTGCGG CCAACTTACT TCTGACAACG ATCGGAGGAC CGAAGGAGCT 5821 AACCGCTTTT TTGCACAACA TGGGGGATCA TGTAACTCGC CTTGATCGTT GGGAACCGGA 5881 GCTGAATGAA GCCATACCAA ACGACGAGCG TGACACCACG ATGCCTGTAG CAATGGCAAC 5941 AACGTTGCGC AAACTATTAA CTGGCGAACT ACTTACTCTA GCTTCCCGGC AACAATTAAT 6001 AGACTGGATG GAGGCGGATA AAGTTGCAGG ACCACTTCTG CGCTCGGCCC TTCCGGCTGG 6061 CTGGTTTATT GCTGATAAAT CTGGAGCCGG TGAGCGTGGG TCTCGCGGTA TCATTGCAGC 6121 ACTGGGGCCA GATGGTAAGC CCTCCCGTAT CGTAGTTATC TACACGACGG GGAGTCAGGC 6181 AACTATGGAT GAACGAAATA GACAGATCGC TGAGATAGGT GCCTCACTGA TTAAGCATTG 6241 GTAACTGTCA GACCAAGTTT ACTCATATAT ACTTTAGATT GATTTAAAAC TTCATTTTTA 6301 ATTTAAAAGG ATCTAGGTGA AGATCCTTTT TGATAATCTC ATGACCAAAA TCCCTTAACG 6361 TGAGTTTTCG TTCCACTGAG CGTCAGACCC CGTAGAAAAG ATCAAAGGAT CTTCTTGAGA 6421 TCCTTTTTTT CTGCGCGTAA TCTGCTGCTT GCAAACAAAA AAACCACCGC TACCAGCGGT 6481 GGTTTGTTTG CCGGATCAAG AGCTACCAAC TCTTTTTCCG AAGGTAACTG GCTTCAGCAG 6541 AGCGCAGATA CCAAATACTG TTCTTCTAGT GTAGCCGTAG TTAGGCCACC ACTTCAAGAA 6601 CTCTGTAGCA CCGCCTACAT ACCTCGCTCT GCTAATCCTG TTACCAGTGG CTGCTGCCAG 6661 TGGCGATAAG TCGTGTCTTA CCGGGTTGGA CTCAAGACGA TAGTTACCGG ATAAGGCGCA 6721 GCGGTCGGGC TGAACGGGGG GTTCGTGCAC ACAGCCCAGC TTGGAGCGAA CGACCTACAC 6781 CGAACTGAGA TACCTACAGC GTGAGCTATG AGAAAGCGCC ACGCTTCCCG AAGGGAGAAA 6841 GGCGGACAGG TATCCGGTAA GCGGCAGGGT CGGAACAGGA GAGCGCACGA GGGAGCTTCC 6901 AGGGGGAAAC GCCTGGTATC TTTATAGTCC TGTCGGGTTT CGCCACCTCT GACTTGAGCG 6961 TCGATTTTTG TGATGCTCGT CAGGGGGGCG GAGCCTATGG AAAAACGCCA GCAACGCGGC 7021 CTTTTTACGG TTCCTGGCCT TTTGCTGGCC TTTTGCTCAC ATGGCTCGAC AGATCT //