LOCUS pwB 6427 bp DNA circular SYN 22-Mar-2018 DEFINITION - ACCESSION - KEYWORDS - SOURCE - FEATURES Location/Qualifiers misc_feature complement(49..57) /note="SV40 minor late 19S RNA" misc_feature 218..281 /note="SV40 21bp repeats" rep_origin 238..373 /note="SV40 Ori" mRNA 287..293 /note="late-early transcription startpoints" mRNA 327..333 /note="early-early transcription start points" CDS 418..1137 /note="EGFP" exon 1663..1695 /note="EF-1a exon 1" intron 1696..2635 /note="EF-1a intron A" exon 2635..2643 /note="EF-1a exon 2 leader" CDS 2704..3792 /note="BKV isolate A-66H (serogroup IV) VP1, codmod" misc_difference 2920..2922 /note="E73" misc_difference 3346..3348 /note="K->R in Novarra BKVN patients" misc_recomb 3800..3824 /note="attB2" mRNA 3886..4474 /note="WPRE" polyA_site 4808 /note="site of polyA addition" rep_origin 5179..5912 /note="MB1 Ori" CDS 6000..6374 /note="Zeocin resistance" BASE COUNT 1465 A 1729 C 1750 G 1483 T 0 OTHER ORIGIN ? 1 CCCTGCAGGG CCTGAAATAA CCTCTGAAAG AGGAACTTGG TTAGGTACCT GTGGAATGTG 61 TGTCAGTTAG GGTGTGGAAA GTCCCCAGGC TCCCCAGCAG GCAGAAGTAT GCAAAGCATG 121 CATCTCAATT AGTCAGCAAC CAGGTGTGGA AAGTCCCCAG GCTCCCCAGC AGGCAGAAGT 181 ATGCAAAGCA TGCATCTCAA TTAGTCAGCA ACCATAGTCC CGCCCCTAAC TCCGCCCATC 241 CCGCCCCTAA CTCCGCCCAG TTCCGCCCAT TCTCCGCCCC ATGGCTGACT AATTTTTTTT 301 ATTTATACAG AGGCCGAGGC CGCCTCGGCC TCTGAGCTAT TCCAGAAGTA GTGAGGAGGC 361 TTTTTTGGAG GCCTAGGCTT TTGCAAAAAG CTTGATTGGG ATCCACCGGT CGCCACCATG 421 GTGAGCAAGG GCGAGGAGCT GTTCACCGGG GTGGTGCCCA TCCTGGTCGA GCTGGACGGC 481 GACGTAAACG GCCACAAGTT CAGCGTGTCC GGCGAGGGCG AGGGCGATGC CACCTACGGC 541 AAGCTGACCC TGAAGTTCAT CTGCACCACC GGCAAGCTGC CCGTGCCCTG GCCCACCCTC 601 GTGACCACCC TGACCTACGG CGTGCAGTGC TTCAGCCGCT ACCCCGACCA CATGAAGCAG 661 CACGACTTCT TCAAGTCCGC CATGCCCGAA GGCTACGTCC AGGAGCGCAC CATCTTCTTC 721 AAGGACGACG GCAACTACAA GACCCGCGCC GAGGTGAAGT TCGAGGGCGA CACCCTGGTG 781 AACCGCATCG AGCTGAAGGG CATCGACTTC AAGGAGGACG GCAACATCCT GGGGCACAAG 841 CTGGAGTACA ACTACAACAG CCACAACGTC TATATCATGG CCGACAAGCA GAAGAACGGC 901 ATCAAGGTGA ACTTCAAGAT CCGCCACAAC ATCGAGGACG GCAGCGTGCA GCTCGCCGAC 961 CACTACCAGC AGAACACCCC CATCGGCGAC GGCCCCGTGC TGCTGCCCGA CAACCACTAC 1021 CTGAGCACCC AGTCCGCCCT GAGCAAAGAC CCCAACGAGA AGCGCGATCA CATGGTCCTG 1081 CTGGAGTTCG TGACCGCCGC CGGGATCACT CTCGGCATGG ACGAGCTGTA CAAGTAAAGC 1141 GGCCGCTTCG AGCAGACATG ATAAGATACA TTGATGAGTT TGGACAAACC ACAACTAGAA 1201 TGCAGTGAAA AAAATGCTTT ATTTGTGAAA TTTGTGATGC TATTGCTTTA TTTGTAACCA 1261 TTATAAGCTG CAATAAACAA GTTAACAACA ACAATTGCAT TCATTTTATG TTTCAGGTTC 1321 AGGGGGAGGT GTGGGAGGTT TTTTAAAGCA AGTAAAACCT CTACAAATGT GGTAAAATCG 1381 ATAAGGATCC GGGCTGGCGT AATAGCGAAG AGGCCCGCAC CGATCGCCCT TCCCAACAGT 1441 TGCGGTGGAG AAGAGCATGC GTGAGGCTCC GGTGCCCGTC AGTGGGCAGA GCGCACATCG 1501 CCCACAGTCC CCGAGAAGTT GGGGGGAGGG GTCGGCAATT GAACCGGTGC CTAGAGAAGG 1561 TGGCGCGGGG TAAACTGGGA AAGTGATGTC GTGTACTGGC TCCGCCCTTT TCCCGAGGGT 1621 GGGGGAGAAC CGTATATAAG TGCAGTAGTC GCTGTGAACG TTCTTTTTCG CAACGGGTTT 1681 GCCGCCAGAA CACAGGTAAG TGCCGTGTGT GGTTCCCGCG GGCCTGGCCT CTTTACGGGT 1741 TATGGCCCTT GCGTGCCTTG AATTACTTCC ACCTGGCTGC AGTACGTGAT TCTTGATCCC 1801 GAGCTTCGGG TTGGAAGTGG GTGGGAGAGT TCGAGGCCTT GCGCTTAAGG AGCCCCTTCG 1861 CCTCGTGCTT GAGTTGAGGC CTGGCCTGGG CGCTGGGGCC GCCGCGTGCG AATCTGGTGG 1921 CACCTTCGCG CCTGTCTCGC TGCTTTCGAT AAGTCTCTAG CCATTTAAAA TTTTTGATGA 1981 CCTGCTGCGA CGCTTTTTTT CTGGCAAGAT AGTCTTGTAA ATGCGGGCCA AGATCTGCAC 2041 ACTGGTATTT CGGTTTTTGG GGCCGCGGGC GGCGACGGGG CCCGTGCGTC CCAGCGCACA 2101 TGTTCGGCGA GGCGGGGCCT GCGAGCGCGG CCACCGAGAA TCGGACGGGG GTAGTCTCAA 2161 GCTGGCCGGC CTGCTCTGGT GCCTGGCCTC GCGCCGCCGT GTATCGCCCC GCCCTGGGCG 2221 GCAAGGCTGG CCCGGTCGGC ACCAGTTGCG TGAGCGGAAA GATGGCCGCT TCCCGGCCCT 2281 GCTGCAGGGA GCTCAAAATG GAGGACGCGG CGCTCGGGAG AGCGGGCGGG TGAGTCACCC 2341 ACACAAAGGA AAAGGGCCTT TCCGTCCTCA GCCGTCGCTT CATGTGACTC CACGGAGTAC 2401 CGGGCGCCGT CCAGGCACCT CGATTAGTTC TCGAGCTTTT GGAGTACGTC GTCTTTAGGT 2461 TGGGGGGAGG GGTTTTATGC GATGGAGTTT CCCCACACTG AGTGGGTGGA GACTGAAGTT 2521 AGGCCAGCTT GGCACTTGAT GTAATTCTCC TTGGAATTTG CCCTTTTTGA GTTTGGATCT 2581 TGGTTCATTC TCAAGCCTCA GACAGTGGTT CAAAGTTTTT TTCTTCCATT TCAGGTGTCG 2641 TGAGGAATTC TCTAGAGCTT GATCAAACAA GTTTGTACAA AAAAGCAGGC TTCCGGAGCC 2701 ACCATGGCAC CCACAAAGCG CAAGGGCGAA TGCCCCGGCG CCGCCCCAAA GAAACCCAAG 2761 GAGCCAGTCC AGGTCCCCAA GTTGCTGATC AAGGGCGGCG TGGAGGTCCT GGAGGTCAAG 2821 ACCGGCGTGG ACGCCATCAC CGAGGTGGAG TGTTTCTTGA ACCCCGAGAT GGGCGACCCC 2881 GACAACGATC TGCGCGGGTA CAGCTTGCGC CTGACCGCCG AGACCGCATT CGATTCCGAC 2941 TCACCCGATC GCAAGATGTT GCCATGCTAT TCCACCGCCC GCATCCCACT GCCCAACCTC 3001 AACGAAGACT TGACATGCGG CAACCTGCTG ATGTGGGAAG CCGTCACCGT GAAGACCGAA 3061 GTCATCGGCA TCACCTCCAT GTTGAATCTG CACGCCGGAA GCCAAAAGGT GCACGAGAAC 3121 GGCGGCGGGA AGCCCATCCA GGGGTCAAAC TTCCATTTCT TCGCCGTCGG CGGCGATCCA 3181 CTCGAGATGC AAGGCGTGTT GATGAACTAT CGCACCAAGT ATCCCGAGGG CACCGTGACA 3241 CCCAAGAACC CAACCGCCCA AAGTCAGGTC ATGAACACCG ATCACAAAGC ATATCTCGAT 3301 AAGAATAACG CCTACCCCGT CGAGTGTTGG ATCCCCGATC CATCCAAGAA CGAGAACACC 3361 CGCTACTTCG GCACCTATAC CGGCGGCGAG AACGTCCCAC CCGTGTTGCA CGTGACAAAT 3421 ACCGCCACAA CCGTCCTGCT CGACGAGCAA GGCGTCGGCC CACTCTGCAA GGCAGACAGC 3481 CTCTACGTCA GCGCCGCCGA CATCTGCGGA CTGTTCACCA ATTCAAGCGG CACCCAGCAA 3541 TGGCGCGGGT TGCCCCGCTA CTTCAAAATC AGGCTCCGCA AGCGCAGCGT GAAGAATCCC 3601 TATCCAATCA GTTTCCTGCT GTCCGATTTG ATCAATCGCC GCACACAACG CGTCGACGGC 3661 CAGCCCATGT ACGGCATGGA AAGCCAAGTC GAAGAAGTGC GCGTCTTCGA CGGGACCGAG 3721 CAGTTGCCCG GCGATCCCGA CATGATCCGC TACATCGATC GCCAAGGCCA GCTCCAAACC 3781 AAGATGGTCT GAGACTAGTA CCCAGCTTTC TTGTACAAAG TGGTTCGATC TAGAATGGCT 3841 AGTGGATCCC CCGGGCTGCA GGAATTCGAT ATCAAGCTTA TCGATAATCA ACCTCTGGAT 3901 TACAAAATTT GTGAAAGATT GACTGGTATT CTTAACTATG TTGCTCCTTT TACGCTATGT 3961 GGATACGCTG CTTTAATGCC TTTGTATCAT GCTATTGCTT CCCGTATGGC TTTCATTTTC 4021 TCCTCCTTGT ATAAATCCTG GTTGCTGTCT CTTTATGAGG AGTTGTGGCC CGTTGTCAGG 4081 CAACGTGGCG TGGTGTGCAC TGTGTTTGCT GACGCAACCC CCACTGGTTG GGGCATTGCC 4141 ACCACCTGTC AGCTCCTTTC CGGGACTTTC GCTTTCCCCC TCCCTATTGC CACGGCGGAA 4201 CTCATCGCCG CCTGCCTTGC CCGCTGCTGG ACAGGGGCTC GGCTGTTGGG CACTGACAAT 4261 TCCGTGGTGT TGTCGGGGAA ATCATCGTCC TTTCCTTGGC TGCTCGCCTG TGTTGCCACC 4321 TGGATTCTGC GCGGGACGTC CTTCTGCTAC GTCCCTTCGG CCCTCAATCC AGCGGACCTT 4381 CCTTCCCGCG GCCTGCTGCC GGCTCTGCGG CCTCTTCCGC GTCTTCGCCT TCGCCCTCAG 4441 ACGAGTCGGA TCTCCCTTTG GGCCGCCTCC CCGCATCGAT ACCGTCGGCC CACTGCTCCC 4501 TAAACCTGAG CTAGCATTAT CCCTAATACC TGCCACCCCA CTCTTAATCA GTGGTGGAAG 4561 AACGGTCTCA GAACTGTTTG TTTCAATTGG CCATTTAAGT TTAGTAGTAA AAGACTGGTT 4621 AATGATAACA ATGCATCGTA AAACCTTCAG AAGGAAAGGA GAATGTTTTG TGGACCACTT 4681 TGGTTTTCTT TTTTGCGTGT GGCAGTTTTA AGTTATTAGT TTTTAAAATC AGTACTTTTT 4741 AATGGAAACA ACTTGACCAA AAATTTGTCA CAGAATTTTG AGACCCATTA AAAAAGTTAA 4801 ATGAGAAACC TGTGTGTTCC TTTGGTCAAC ACCGAGACAT TTAGGTGAAA GACATCTAAT 4861 TCTGGTTTTA CGAATCTGGA AACTTCTTGA AAATGTAATT CTTGAGTTAA CACTTCTGGG 4921 TGGAGAATAG GGTTGTTTTC CCCCCACATA ATTGGAAGGG GAAGGAATAT CATTTAAAGC 4981 TATGGGAGGG TTTCTTTGAT TACAACACTG GAGAGAAATG CAGCATGTTG CTGATTGCCT 5041 GTCACTAAAA CAGGCCAAAA ACTGAGTCCT TGGGTTGCAT AGAAAGCTTC ATGTTGCTAA 5101 ACCAATGTTA AGTGAATCTT TGGAAACAAA ATGTTTCCAA ATTACTGGGA TGTGCATGTT 5161 GAAACGTGGG TTAATTAACT AGCCATGACC AAAATCCCTT AACGTGAGTT TTCGTTCCAC 5221 TGAGCGTCAG ACCCCGTAGA AAAGATCAAA GGATCTTCTT GAGATCCTTT TTTTCTGCGC 5281 GTAATCTGCT GCTTGCAAAC AAAAAAACCA CCGCTACCAG CGGTGGTTTG TTTGCCGGAT 5341 CAAGAGCTAC CAACTCTTTT TCCGAAGGTA ACTGGCTTCA GCAGAGCGCA GATACCAAAT 5401 ACTGTTCTTC TAGTGTAGCC GTAGTTAGGC CACCACTTCA AGAACTCTGT AGCACCGCCT 5461 ACATACCTCG CTCTGCTAAT CCTGTTACCA GTGGCTGCTG CCAGTGGCGA TAAGTCGTGT 5521 CTTACCGGGT TGGACTCAAG ACGATAGTTA CCGGATAAGG CGCAGCGGTC GGGCTGAACG 5581 GGGGGTTCGT GCACACAGCC CAGCTTGGAG CGAACGACCT ACACCGAACT GAGATACCTA 5641 CAGCGTGAGC TATGAGAAAG CGCCACGCTT CCCGAAGGGA GAAAGGCGGA CAGGTATCCG 5701 GTAAGCGGCA GGGTCGGAAC AGGAGAGCGC ACGAGGGAGC TTCCAGGGGG AAACGCCTGG 5761 TATCTTTATA GTCCTGTCGG GTTTCGCCAC CTCTGACTTG AGCGTCGATT TTTGTGATGC 5821 TCGTCAGGGG GGCGGAGCCT ATGGAAAAAC GCCAGCAACG CGGCCTTTTT ACGGTTCCTG 5881 GCCTTTTGCT GGCCTTTTGC TCACATGTTC TTAATTAAAT TTTTCAAAAG TAGTTGACAA 5941 TTAATCATCG GCATAGTATA TCGGCATAGT ATAATACGAC TCACTATAGG AGGGCCATCA 6001 TGGCCAAGTT GACCAGTGCT GTCCCAGTGC TCACAGCCAG GGATGTGGCT GGAGCTGTTG 6061 AGTTCTGGAC TGACAGGTTG GGGTTCTCCA GAGATTTTGT GGAGGATGAC TTTGCAGGTG 6121 TGGTCAGAGA TGATGTCACC CTGTTCATCT CAGCAGTCCA GGACCAGGTG GTGCCTGACA 6181 ACACCCTGGC TTGGGTGTGG GTGAGAGGAC TGGATGAGCT GTATGCTGAG TGGAGTGAGG 6241 TGGTCTCCAC CAACTTCAGG GATGCCAGTG GCCCTGCCAT GACAGAGATT GGAGAGCAGC 6301 CCTGGGGGAG AGAGTTTGCC CTGAGAGACC CAGCAGGCAA CTGTGTGCAC TTTGTGGCAG 6361 AGGAGCAGGA CTGAGGATAA GAATTGTAAC AAAAAACCCC GCCCCGGCGG GGTTTTTTGT 6421 TAATTAA //