LOCUS pCAG-BKV 6847 bp ss-DNA circular SYN 18-Feb-2009 DEFINITION - ACCESSION - KEYWORDS - SOURCE - FEATURES Location/Qualifiers enhancer 4..384 /note=CMV enhancer promoter 382..663 /note=chicken beta-actin promoter intron 675..1633 /note=chicken beta actin intron intron 1638..1678 /note=rabbit beta globin intron 2 splice acceptor CDS 1650..1652 /note=Met CDS 1656..1658 /note=Met misc_feature 1679..1732 /note=rabbit beta globin exon 3 source 1752..4019 /note=BKV isolate KOM5 CDS 1988..3043 /note=VP2 CDS 2345..3043 /note=VP3 CDS 2928..4016 /note=VP1 polyA_signal 4129..4653 /note=rabbit beta-globin polyA rep_origin 5038..5712 /note=ColE1 Ori CDS complement(5856..6716) /note=Amp resistance BASE COUNT 1642 A 1641 C 1821 G 1741 T 0 OTHER ORIGIN ? 1 GTCGACATTG ATTATTGACT AGTTATTAAT AGTAATCAAT TACGGGGTCA TTAGTTCATA 61 GCCCATATAT GGAGTTCCGC GTTACATAAC TTACGGTAAA TGGCCCGCCT GGCTGACCGC 121 CCAACGACCC CCGCCCATTG ACGTCAATAA TGACGTATGT TCCCATAGTA ACGCCAATAG 181 GGACTTTCCA TTGACGTCAA TGGGTGGAGT ATTTACGGTA AACTGCCCAC TTGGCAGTAC 241 ATCAAGTGTA TCATATGCCA AGTACGCCCC CTATTGACGT CAATGACGGT AAATGGCCCG 301 CCTGGCATTA TGCCCAGTAC ATGACCTTAT GGGACTTTCC TACTTGGCAG TACATCTACG 361 TATTAGTCAT CGCTATTACC ATGGTCGAGG TGAGCCCCAC GTTCTGCTTC ACTCTCCCCA 421 TCTCCCCCCC CTCCCCACCC CCAATTTTGT ATTTATTTAT TTTTTAATTA TTTTGTGCAG 481 CGATGGGGGC GGGGGGGGGG GGGGGGCGCG CGCCAGGCGG GGCGGGGCGG GGCGAGGGGC 541 GGGGCGGGGC GAGGCGGAGA GGTGCGGCGG CAGCCAATCA GAGCGGCGCG CTCCGAAAGT 601 TTCCTTTTAT GGCGAGGCGG CGGCGGCGGC GGCCCTATAA AAAGCGAAGC GCGCGGCGGG 661 CGGGAGTCGC TGCGCGCTGC CTTCGCCCCG TGCCCCGCTC CGCGCCGCCT CGCGCCGCCC 721 GCCCCGGCTC TGACTGACCG CGTTACTCCC ACAGGTGAGC GGGCGGGACG GCCCTTCTCC 781 TCCGGGCTGT AATTAGCGCT TGGTTTAATG ACGGCTTGTT TCTTTTCTGT GGCTGCGTGA 841 AAGCCTTGAG GGGCTCCGGG AGGGCCCTTT GTGCGGGGGG AGCGGCTCGG GGGGTGCGTG 901 CGTGTGTGTG TGCGTGGGGA GCGCCGCGTG CGGCTCCGCG CTGCCCGGCG GCTGTGAGCG 961 CTGCGGGCGC GGCGCGGGGC TTTGTGCGCT CCGCAGTGTG CGCGAGGGGA GCGCGGCCGG 1021 GGGCGGTGCC CCGCGGTGCG GGGGGGGCTG CGAGGGGAAC AAAGGCTGCG TGCGGGGTGT 1081 GTGCGTGGGG GGGTGAGCAG GGGGTGTGGG CGCGTCGGTC GGGCTGCAAC CCCCCCTGCA 1141 CCCCCCTCCC CGAGTTGCTG AGCACGGCCC GGCTTCGGGT GCGGGGCTCC GTACGGGGCG 1201 TGGCGCGGGG CTCGCCGTGC CGGGCGGGGG GTGGCGGCAG GTGGGGGTGC CGGGCGGGGC 1261 GGGGCCGCCT CGGGCCGGGG AGGGCTCGGG GGAGGGGCGC GGCGGCCCCC GGAGCGCCGG 1321 CGGCTGTCGA GGCGCGGCGA GCCGCAGCCA TTGCCTTTTA TGGTAATCGT GCGAGAGGGC 1381 GCAGGGACTT CCTTTGTCCC AAATCTGTGC GGAGCCGAAA TCTGGGAGGC GCCGCCGCAC 1441 CCCCTCTAGC GGGCGCGGGG CGAAGCGGTG CGGCGCCGGC AGGAAGGAAA TGGGCGGGGA 1501 GGGCCTTCGT GCGTCGCCGC GCCGCCGTCC CCTTCTCCCT CTCCAGCCTC GGGGCTGTCC 1561 GCGGGGGGAC GGCTGCCTTC GGGGGGGACG GGGCAGGGCG GGGTTCGGCT TCTGGCGTGT 1621 GACCGGCGGC TCTAGAGCCT CTGCTAACCA TGTTCATGCC TTCTTCTTTT TCCTACAGCT 1681 CCTGGGCAAC GTGCTGGTTA TTGTGCTGTC TCATCATTTT GGCAAAGAAT TCTGCAGTCG 1741 ACGGTACCGG TATGGTTCTG CGCCAGCTGT CACGACAAGC TTCTGTGAAA GTTAGTAAAA 1801 CCTGGACTGG AACAAAAAAA AGGGCTCAGA GGATTTTTAT TTTTATTTTA GAGCTTTTGC 1861 TGGAATTTTG TAGAGGTGAA GACAGTGTAG ACGGGAAAAA CAAAAGTACC ACTGCTTTAC 1921 CTGCTGTAAA AGACTCTGTA AAAGACTCCT AGGTAAGTAA TCCCTTTTTT TTTGTATTTC 1981 CAGGTTGATG GGTGCTGCTC TAGCACTTTT GGGGGACCTA GTTGCCAGTG TATCTGAGGC 2041 TGCTGCTGCC ACAGGATTTT CAGTGGCTGA AATTGCTGCT GGGGAGGCTG CTGCTGCTAT 2101 AGAAGTTCAA ATTGCATCCC TTGCTACTGT AGAGGGCATA ACAAGTACCT CAGAGGCTAT 2161 AGCTGCTATA GGCCTAACTC CTCAAACATA TGCTGTAATT GCTGGTGCTC CTGGGGCTAT 2221 TGCTGGGTTT GCTGCTTTAA TTCAAACTGT TACTGGTATT AGTTCCTTGG CTCAAGTAGG 2281 GTATAGGTTT TTTAGTGATT GGGATCACAA AGTTTCCACT GTAGGCCTCT ATCAGCAATC 2341 AGGCATGGCT TTGGAATTGT TTAACCCAGA TGAGTACTAT GATATTTTGT TTCCTGGTGT 2401 AAATACTTTT GTAAATAATA TTCAATACCT TGATCCTAGG CATTGGGGTC CTTCCTTGTT 2461 TGCTACTATT TCCCAGGCTT TGTGGCATGT TATTAGGGAT GATATACCTG CTATAACCTC 2521 ACAAGAATTG CAAAGAAGAA CAGAAAGATT TTTTAGAGAC TCCTTGGCTA GATTTTTGGA 2581 GGAAACTACC TGGACAATTG TAAATGCCCC TATAAACTTT TATAATTATA TTCAAGAATA 2641 TTATTCTGAT CTTTCCCCTA TTAGGCCCTC AATGGTTAGA CAAGTGGCTG AAAGGGAAGG 2701 TACCCGTGTA CATTTTGGCC ATACTTATAG TATAGATGAT GCTGACAGTA TAGAAGAAGT 2761 TACACAAAGA ATGGACTTAA GAAATCAACA AACTGTACAT TCAGGAGAGT TTATAGAAAA 2821 AACTATTGCC CCAGGAGGTG CTAATCAAAG AACTGCTCCT CAATGGATGT TGCCTTTACT 2881 TCTAGGCCTG TACGGGACTG TAACACCTGC TCTTGAAGCA TATGAAGATG GCCCCAACCA 2941 AAAGAAAAGG AGAGTGTCCA GGGGCAGCTC CCAAAAAGCC AAAGGAACCC GTGCAAGTGC 3001 CAAAACTACT AATAAAAGGA GGAGTAGAAG TTCTAGAAGT TAAAACTGGG GTAGATGCTA 3061 TAACAGAGGT AGAATGCTTC CTAAACCCAG AAATGGGGGA TCCAGATGAA AACCTTAGGG 3121 GCTTTAGTCT AAAGCTAAGT GCTGAAAATG ACTTTAGCAG TGATAGCCCA GAAAGAAAAA 3181 TGCTTCCCTG TTACAGCACA GCAAGAATTC CCCTCCCCAA TTTAAATGAG GACCTAACCT 3241 GTGGAAATCT ACTGATGTGG GAGGCTGTAA CTGTACAAAC AGAGGTCATT GGAATAACTA 3301 GCATGCTTAA CCTTCATGCA GGGTCACAAA AAGTGCATGA GCATGGTGGA GGTAAACCTA 3361 TTCAAGGCAG TAATTTCCAC TTCTTTGCTG TTGGTGGAGA CCCCTTGGAA ATGCAGGGAG 3421 TGCTAATGAA TTACAGGACC AAGTACCCAG ATGGTACTAT AACCCCAAAA AACCCAACAG 3481 CCCAGTCCCA GGTAATGAAT ACTGACCATA AGGCCTATTT GGACAAAAAC AATGCTTATC 3541 CAGTTGAGTG CTGGGTTCCT GATCCTAGTA GAAATGAAAA TACTAGGTAT TTTGGGACTT 3601 TCACAGGAGG GGAAAATGTT CCCCCAGTAC TTCATGTGAC CAACACAGCT ACCACAGTGT 3661 TGCTAGATGA ACAGGGTGTG GGGCCTCTTT GTAAAGCTGA TAGCCTGTAT GTTTCAGCTG 3721 CTGATATTTG TGGCCTGTTT ACTAACAGCT CTGGAACACA ACAGTGGAGA GGCCTTGCAA 3781 GATATTTTAA GATTCGCCTG AGAAAAAGAT CTGTAAAAAA TCCTTACCCA ATTTCCTTTT 3841 TGCTAAGTGA CCTTATAAAC AGGAGAACCC AGAGAGTGGA TGGGCAGCCT ATGTATGGTA 3901 TGGAATCCCA GGTAGAAGAG GTTAGGGTGT TTGATGGCAC AGAAAGACTT CCAGGGGACC 3961 CAGATATGAT AAGATATATT GATAAACAAG GACAATTGCA AACCAAAATG CTTTAAACAG 4021 CGGCCGCACT CTAGATCATA ATCAGCCATA CCACATTTGT AGAGGTTTTA CTTGCTTTAA 4081 AAAACCTCCC ACACCTCCCC CTGAACCTGA AACATAAAAT GAATGCAATT CACTCCTCAG 4141 GTGCAGGCTG CCTATCAGAA GGTGGTGGCT GGTGTGGCCA ATGCCCTGGC TCACAAATAC 4201 CACTGAGATC TTTTTCCCTC TGCCAAAAAT TATGGGGACA TCATGAAGCC CCTTGAGCAT 4261 CTGACTTCTG GCTAATAAAG GAAATTTATT TTCATTGCAA TAGTGTGTTG GAATTTTTTG 4321 TGTCTCTCAC TCGGAAGGAC ATATGGGAGG GCAAATCATT TAAAACATCA GAATGAGTAT 4381 TTGGTTTAGA GTTTGGCAAC ATATGCCATA TGCTGGCTGC CATGAACAAA GGTGGCTATA 4441 AAGAGGTCAT CAGTATATGA AACAGCCCCC TGCTGTCCAT TCCTTATTCC ATAGAAAAGC 4501 CTTGACTTGA GGTTAGATTT TTTTTATATT TTGTTTTGTG TTATTTTTTT CTTTAACATC 4561 CCTAAAATTT TCCTTACATG TTTTACTAGC CAGATTTTTC CTCCTCTCCT GACTACTCCC 4621 AGTCATAGCT GTCCCTCTTC TCTTATGAAG ATCCCTCGAC CTGCAGCCCA AGCTTGGCGT 4681 AATCATGGTC ATAGCTGTTT CCTGTGTGAA ATTGTTATCC GCTCACAATT CCACACAACA 4741 TACGAGCCGG AAGCATAAAG TGTAAAGCCT GGGGTGCCTA ATGAGTGAGC TAACTCACAT 4801 TAATTGCGTT GCGCTCACTG CCCGCTTTCC AGTCGGGAAA CCTGTCGTGC CAGCGATCCG 4861 CTGCATTAAT GAATCGGCCA ACGCGCGGGG AGAGGCGGTT TGCGTATTGG GCGCTCTTCC 4921 GCTTCCTCGC TCACTGACTC GCTGCGCTCG GTCGTTCGGC TGCGGCGAGC GGTATCAGCT 4981 CACTCAAAGG CGGTAATACG GTTATCCACA GAATCAGGGG ATAACGCAGG AAAGAACATG 5041 TGAGCAAAAG GCCAGCAAAA GGCCAGGAAC CGTAAAAAGG CCGCGTTGCT GGCGTTTTTC 5101 CATAGGCTCC GCCCCCCTGA CGAGCATCAC AAAAATCGAC GCTCAAGTCA GAGGTGGCGA 5161 AACCCGACAG GACTATAAAG ATACCAGGCG TTTCCCCCTG GAAGCTCCCT CGTGCGCTCT 5221 CCTGTTCCGA CCCTGCCGCT TACCGGATAC CTGTCCGCCT TTCTCCCTTC GGGAAGCGTG 5281 GCGCTTTCTC AATGCTCACG CTGTAGGTAT CTCAGTTCGG TGTAGGTCGT TCGCTCCAAG 5341 CTGGGCTGTG TGCACGAACC CCCCGTTCAG CCCGACCGCT GCGCCTTATC CGGTAACTAT 5401 CGTCTTGAGT CCAACCCGGT AAGACACGAC TTATCGCCAC TGGCAGCAGC CACTGGTAAC 5461 AGGATTAGCA GAGCGAGGTA TGTAGGCGGT GCTACAGAGT TCTTGAAGTG GTGGCCTAAC 5521 TACGGCTACA CTAGAAGGAC AGTATTTGGT ATCTGCGCTC TGCTGAAGCC AGTTACCTTC 5581 GGAAAAAGAG TTGGTAGCTC TTGATCCGGC AAACAAACCA CCGCTGGTAG CGGTGGTTTT 5641 TTTGTTTGCA AGCAGCAGAT TACGCGCAGA AAAAAAGGAT CTCAAGAAGA TCCTTTGATC 5701 TTTTCTACGG GGTCTGACGC TCAGTGGAAC GAAAACTCAC GTTAAGGGAT TTTGGTCATG 5761 AGATTATCAA AAAGGATCTT CACCTAGATC CTTTTAAATT AAAAATGAAG TTTTAAATCA 5821 ATCTAAAGTA TATATGAGTA AACTTGGTCT GACAGTTACC AATGCTTAAT CAGTGAGGCA 5881 CCTATCTCAG CGATCTGTCT ATTTCGTTCA TCCATAGTTG CCTGACTCCC CGTCGTGTAG 5941 ATAACTACGA TACGGGAGGG CTTACCATCT GGCCCCAGTG CTGCAATGAT ACCGCGAGAC 6001 CCACGCTCAC CGGCTCCAGA TTTATCAGCA ATAAACCAGC CAGCCGGAAG GGCCGAGCGC 6061 AGAAGTGGTC CTGCAACTTT ATCCGCCTCC ATCCAGTCTA TTAATTGTTG CCGGGAAGCT 6121 AGAGTAAGTA GTTCGCCAGT TAATAGTTTG CGCAACGTTG TTGCCATTGC TACAGGCATC 6181 GTGGTGTCAC GCTCGTCGTT TGGTATGGCT TCATTCAGCT CCGGTTCCCA ACGATCAAGG 6241 CGAGTTACAT GATCCCCCAT GTTGTGCAAA AAAGCGGTTA GCTCCTTCGG TCCTCCGATC 6301 GTTGTCAGAA GTAAGTTGGC CGCAGTGTTA TCACTCATGG TTATGGCAGC ACTGCATAAT 6361 TCTCTTACTG TCATGCCATC CGTAAGATGC TTTTCTGTGA CTGGTGAGTA CTCAACCAAG 6421 TCATTCTGAG AATAGTGTAT GCGGCGACCG AGTTGCTCTT GCCCGGCGTC AATACGGGAT 6481 AATACCGCGC CACATAGCAG AACTTTAAAA GTGCTCATCA TTGGAAAACG TTCTTCGGGG 6541 CGAAAACTCT CAAGGATCTT ACCGCTGTTG AGATCCAGTT CGATGTAACC CACTCGTGCA 6601 CCCAACTGAT CTTCAGCATC TTTTACTTTC ACCAGCGTTT CTGGGTGAGC AAAAACAGGA 6661 AGGCAAAATG CCGCAAAAAA GGGAATAAGG GCGACACGGA AATGTTGAAT ACTCATACTC 6721 TTCCTTTTTC AATATTATTG AAGCATTTAT CAGGGTTATT GTCTCATGAG CGGATACATA 6781 TTTGAATGTA TTTAGAAAAA TAAACAAATA GGGGTTCCGC GCACATTTCC CCGAAAAGTG 6841 CCACCTG //