LOCUS p1Aw__Atwood_JC_ 6484 bp ss-DNA circular SYN 01-Jul-2013 DEFINITION . FEATURES Location/Qualifiers promoter <49..>393 /note="SV40 promoter ( SELP)" enhancer 71..213 /note="SV40 enhancer elements" misc_feature 218..281 /note="SV40 21bp repeats" rep_origin 238..>373 /note="SV40 Ori" CDS 418..1137 /note="EGFP" polyA_signal 1153..>1374 /note="SV40 Late PolyA" promoter <1465..2643 /note="EF1a promoter and UTR" misc_difference 1465..>1656 /note="rhesus-derived" exon 1663..1695 /note="EF-1a exon 1" intron 1696..2635 /note="EF-1a intron A" misc_recomb 2667..2691 /note="attB1" CDS 2704..3768 /note="JCV Mad1 VP1 (codmod)" misc_difference 3502..3504 /note="Ser269" misc_recomb 3776..3800 /note="attB2" mRNA 3862..>4450 /note="WPRE" polyA_signal 4486..5154 /note="hEF1a polyA signal" rep_origin 5155..5888 /note="MB1 Ori" promoter 5889..5975 /note="EM7 promoter" CDS 5976..6350 /note="Zeo" terminator 6351..6403 /note="terminator (rpmB/G)" frag 6404..6484 /date="06-May-2016" /note="1 to 81 of Untitled" CDS 6404..6484 /note="1 to 27 of Translation of p1Aw (Atwood JC_VP1-pwP) (reverse-translated)" BASE COUNT 1471 A 1659 C 1769 G 1547 T 38 OTHER ORIGIN 1 CCCTGCAGGG CCTGAAATAA CCTCTGAAAG AGGAACTTGG TTAGGTACCT GTGGAATGTG 61 TGTCAGTTAG GGTGTGGAAA GTCCCCAGGC TCCCCAGCAG GCAGAAGTAT GCAAAGCATG 121 CATCTCAATT AGTCAGCAAC CAGGTGTGGA AAGTCCCCAG GCTCCCCAGC AGGCAGAAGT 181 ATGCAAAGCA TGCATCTCAA TTAGTCAGCA ACCATAGTCC CGCCCCTAAC TCCGCCCATC 241 CCGCCCCTAA CTCCGCCCAG TTCCGCCCAT TCTCCGCCCC ATGGCTGACT AATTTTTTTT 301 ATTTATACAG AGGCCGAGGC CGCCTCGGCC TCTGAGCTAT TCCAGAAGTA GTGAGGAGGC 361 TTTTTTGGAG GCCTAGGCTT TTGCAAAAAG CTTGATTGGG ATCCACCGGT CGCCACCATG 421 GTGAGCAAGG GCGAGGAGCT GTTCACCGGG GTGGTGCCCA TCCTGGTCGA GCTGGACGGC 481 GACGTAAACG GCCACAAGTT CAGCGTGTCC GGCGAGGGCG AGGGCGATGC CACCTACGGC 541 AAGCTGACCC TGAAGTTCAT CTGCACCACC GGCAAGCTGC CCGTGCCCTG GCCCACCCTC 601 GTGACCACCC TGACCTACGG CGTGCAGTGC TTCAGCCGCT ACCCCGACCA CATGAAGCAG 661 CACGACTTCT TCAAGTCCGC CATGCCCGAA GGCTACGTCC AGGAGCGCAC CATCTTCTTC 721 AAGGACGACG GCAACTACAA GACCCGCGCC GAGGTGAAGT TCGAGGGCGA CACCCTGGTG 781 AACCGCATCG AGCTGAAGGG CATCGACTTC AAGGAGGACG GCAACATCCT GGGGCACAAG 841 CTGGAGTACA ACTACAACAG CCACAACGTC TATATCATGG CCGACAAGCA GAAGAACGGC 901 ATCAAGGTGA ACTTCAAGAT CCGCCACAAC ATCGAGGACG GCAGCGTGCA GCTCGCCGAC 961 CACTACCAGC AGAACACCCC CATCGGCGAC GGCCCCGTGC TGCTGCCCGA CAACCACTAC 1021 CTGAGCACCC AGTCCGCCCT GAGCAAAGAC CCCAACGAGA AGCGCGATCA CATGGTCCTG 1081 CTGGAGTTCG TGACCGCCGC CGGGATCACT CTCGGCATGG ACGAGCTGTA CAAGTAAAGC 1141 GGCCGCTTCG AGCAGACATG ATAAGATACA TTGATGAGTT TGGACAAACC ACAACTAGAA 1201 TGCAGTGAAA AAAATGCTTT ATTTGTGAAA TTTGTGATGC TATTGCTTTA TTTGTAACCA 1261 TTATAAGCTG CAATAAACAA GTTAACAACA ACAATTGCAT TCATTTTATG TTTCAGGTTC 1321 AGGGGGAGGT GTGGGAGGTT TTTTAAAGCA AGTAAAACCT CTACAAATGT GGTAAAATCG 1381 ATAAGGATCC GGGCTGGCGT AATAGCGAAG AGGCCCGCAC CGATCGCCCT TCCCAACAGT 1441 TGCGGTGGAG AAGAGCATGC GTGAGGCTCC GGTGCCCGTC AGTGGGCAGA GCGCACATCG 1501 CCCACAGTCC CCGAGAAGTT GGGGGGAGGG GTCGGCAATT GAACCGGTGC CTAGAGAAGG 1561 TGGCGCGGGG TAAACTGGGA AAGTGATGTC GTGTACTGGC TCCGCCCTTT TCCCGAGGGT 1621 GGGGGAGAAC CGTATATAAG TGCAGTAGTC GCTGTGAACG TTCTTTTTCG CAACGGGTTT 1681 GCCGCCAGAA CACAGGTAAG TGCCGTGTGT GGTTCCCGCG GGCCTGGCCT CTTTACGGGT 1741 TATGGCCCTT GCGTGCCTTG AATTACTTCC ACCTGGCTGC AGTACGTGAT TCTTGATCCC 1801 GAGCTTCGGG TTGGAAGTGG GTGGGAGAGT TCGAGGCCTT GCGCTTAAGG AGCCCCTTCG 1861 CCTCGTGCTT GAGTTGAGGC CTGGCCTGGG CGCTGGGGCC GCCGCGTGCG AATCTGGTGG 1921 CACCTTCGCG CCTGTCTCGC TGCTTTCGAT AAGTCTCTAG CCATTTAAAA TTTTTGATGA 1981 CCTGCTGCGA CGCTTTTTTT CTGGCAAGAT AGTCTTGTAA ATGCGGGCCA AGATCTGCAC 2041 ACTGGTATTT CGGTTTTTGG GGCCGCGGGC GGCGACGGGG CCCGTGCGTC CCAGCGCACA 2101 TGTTCGGCGA GGCGGGGCCT GCGAGCGCGG CCACCGAGAA TCGGACGGGG GTAGTCTCAA 2161 GCTGGCCGGC CTGCTCTGGT GCCTGGCCTC GCGCCGCCGT GTATCGCCCC GCCCTGGGCG 2221 GCAAGGCTGG CCCGGTCGGC ACCAGTTGCG TGAGCGGAAA GATGGCCGCT TCCCGGCCCT 2281 GCTGCAGGGA GCTCAAAATG GAGGACGCGG CGCTCGGGAG AGCGGGCGGG TGAGTCACCC 2341 ACACAAAGGA AAAGGGCCTT TCCGTCCTCA GCCGTCGCTT CATGTGACTC CACGGAGTAC 2401 CGGGCGCCGT CCAGGCACCT CGATTAGTTC TCGAGCTTTT GGAGTACGTC GTCTTTAGGT 2461 TGGGGGGAGG GGTTTTATGC GATGGAGTTT CCCCACACTG AGTGGGTGGA GACTGAAGTT 2521 AGGCCAGCTT GGCACTTGAT GTAATTCTCC TTGGAATTTG CCCTTTTTGA GTTTGGATCT 2581 TGGTTCATTC TCAAGCCTCA GACAGTGGTT CAAAGTTTTT TTCTTCCATT TCAGGTGTCG 2641 TGAGGAATTC TCTAGAGCTT GATCAAACAA GTTTGTACAA AAAAGCAGGC TTCCGCCGCC 2701 ACCATGGCAC CAACTAAGAG AAAAGGCGAG CGCAAGGACC CTGTGCAGGT TCCCAAGCTG 2761 CTTATTAGGG GCGGTGTTGA GGTTCTTGAG GTCAAGACTG GCGTGGACTC CATAACCGAG 2821 GTGGAGTGCT TCCTCACTCC TGAGATGGGC GACCCCGATG AACATCTTCG CGGATTCTCC 2881 AAGTCTATTT CCATATCCGA CACATTCGAA TCCGATTCCC CCAACAGGGA TATGCTGCCA 2941 TGCTACAGTG TTGCCCGAAT TCCCCTCCCA AATCTTAATG AGGACCTCAC GTGTGGCAAC 3001 ATCCTTATGT GGGAGGCAGT CACTCTCAAG ACGGAAGTCA TCGGAGTCAC GAGTCTGATG 3061 AACGTCCACA GCAACGGTCA GGCCACCCAC GACAACGGTG CTGGCAAACC GGTGCAGGGC 3121 ACATCCTTCC ACTTCTTCAG TGTGGGTGGC GAGGCGCTCG AGCTGCAAGG CGTGCTGTTC 3181 AATTATCGAA CTAAGTACCC GGATGGGACC ATCTTTCCCA AGAACGCGAC CGTGCAGAGT 3241 CAGGTTATGA ATACTGAACA CAAGGCTTAC CTGGATAAAA ACAAGGCGTA TCCAGTAGAG 3301 TGCTGGGTGC CAGACCCCAC CCGGAATGAG AACACCAGAT ACTTCGGTAC ACTGACAGGC 3361 GGTGAAAACG TACCTCCAGT GCTCCACATC ACAAATACAG CTACCACAGT GCTGCTGGAT 3421 GAGTTCGGCG TAGGTCCCCT CTGTAAAGGC GACAATCTGT ACCTCTCTGC CGTGGACGTA 3481 TGCGGCATGT TCACAAATCG CAGTGGCTCA CAGCAGTGGA GGGGATTGAG TCGCTACTTC 3541 AAGGTACAGC TTCGCAAGCG GAGAGTTAAG AATCCCTATC CGATCAGTTT CCTTCTCACA 3601 GATCTCATCA ATCGCCGGAC TCCTAGGGTG GATGGCCAAC CTATGTACGG AATGGATGCA 3661 CAGGTGGAAG AGGTCCGCGT CTTCGAAGGC ACTGAGGAGC TGCCTGGGGA TCCTGACATG 3721 ATGCGCTATG TCGACAAGTA CGGCCAGCTC CAGACTAAAA TGCTGTGAGC CTAGGACCCA 3781 GCTTTCTTGT ACAAAGTGGT TCGATCTAGA ATGGCTAGTG GATCCCCCGG GCTGCAGGAA 3841 TTCGATATCA AGCTTATCGA TAATCAACCT CTGGATTACA AAATTTGTGA AAGATTGACT 3901 GGTATTCTTA ACTATGTTGC TCCTTTTACG CTATGTGGAT ACGCTGCTTT AATGCCTTTG 3961 TATCATGCTA TTGCTTCCCG TATGGCTTTC ATTTTCTCCT CCTTGTATAA ATCCTGGTTG 4021 CTGTCTCTTT ATGAGGAGTT GTGGCCCGTT GTCAGGCAAC GTGGCGTGGT GTGCACTGTG 4081 TTTGCTGACG CAACCCCCAC TGGTTGGGGC ATTGCCACCA CCTGTCAGCT CCTTTCCGGG 4141 ACTTTCGCTT TCCCCCTCCC TATTGCCACG GCGGAACTCA TCGCCGCCTG CCTTGCCCGC 4201 TGCTGGACAG GGGCTCGGCT GTTGGGCACT GACAATTCCG TGGTGTTGTC GGGGAAATCA 4261 TCGTCCTTTC CTTGGCTGCT CGCCTGTGTT GCCACCTGGA TTCTGCGCGG GACGTCCTTC 4321 TGCTACGTCC CTTCGGCCCT CAATCCAGCG GACCTTCCTT CCCGCGGCCT GCTGCCGGCT 4381 CTGCGGCCTC TTCCGCGTCT TCGCCTTCGC CCTCAGACGA GTCGGATCTC CCTTTGGGCC 4441 GCCTCCCCGC ATCGATACCG TCGGCCCACT GCTCCCTAAA CCTGAGCTAG CATTATCCCT 4501 AATACCTGCC ACCCCACTCT TAATCAGTGG TGGAAGAACG GTCTCAGAAC TGTTTGTTTC 4561 AATTGGCCAT TTAAGTTTAG TAGTAAAAGA CTGGTTAATG ATAACAATGC ATCGTAAAAC 4621 CTTCAGAAGG AAAGGAGAAT GTTTTGTGGA CCACTTTGGT TTTCTTTTTT GCGTGTGGCA 4681 GTTTTAAGTT ATTAGTTTTT AAAATCAGTA CTTTTTAATG GAAACAACTT GACCAAAAAT 4741 TTGTCACAGA ATTTTGAGAC CCATTAAAAA AGTTAAATGA GAAACCTGTG TGTTCCTTTG 4801 GTCAACACCG AGACATTTAG GTGAAAGACA TCTAATTCTG GTTTTACGAA TCTGGAAACT 4861 TCTTGAAAAT GTAATTCTTG AGTTAACACT TCTGGGTGGA GAATAGGGTT GTTTTCCCCC 4921 CACATAATTG GAAGGGGAAG GAATATCATT TAAAGCTATG GGAGGGTTTC TTTGATTACA 4981 ACACTGGAGA GAAATGCAGC ATGTTGCTGA TTGCCTGTCA CTAAAACAGG CCAAAAACTG 5041 AGTCCTTGGG TTGCATAGAA AGCTTCATGT TGCTAAACCA ATGTTAAGTG AATCTTTGGA 5101 AACAAAATGT TTCCAAATTA CTGGGATGTG CATGTTGAAA CGTGGGTTAA TTAACTAGCC 5161 ATGACCAAAA TCCCTTAACG TGAGTTTTCG TTCCACTGAG CGTCAGACCC CGTAGAAAAG 5221 ATCAAAGGAT CTTCTTGAGA TCCTTTTTTT CTGCGCGTAA TCTGCTGCTT GCAAACAAAA 5281 AAACCACCGC TACCAGCGGT GGTTTGTTTG CCGGATCAAG AGCTACCAAC TCTTTTTCCG 5341 AAGGTAACTG GCTTCAGCAG AGCGCAGATA CCAAATACTG TTCTTCTAGT GTAGCCGTAG 5401 TTAGGCCACC ACTTCAAGAA CTCTGTAGCA CCGCCTACAT ACCTCGCTCT GCTAATCCTG 5461 TTACCAGTGG CTGCTGCCAG TGGCGATAAG TCGTGTCTTA CCGGGTTGGA CTCAAGACGA 5521 TAGTTACCGG ATAAGGCGCA GCGGTCGGGC TGAACGGGGG GTTCGTGCAC ACAGCCCAGC 5581 TTGGAGCGAA CGACCTACAC CGAACTGAGA TACCTACAGC GTGAGCTATG AGAAAGCGCC 5641 ACGCTTCCCG AAGGGAGAAA GGCGGACAGG TATCCGGTAA GCGGCAGGGT CGGAACAGGA 5701 GAGCGCACGA GGGAGCTTCC AGGGGGAAAC GCCTGGTATC TTTATAGTCC TGTCGGGTTT 5761 CGCCACCTCT GACTTGAGCG TCGATTTTTG TGATGCTCGT CAGGGGGGCG GAGCCTATGG 5821 AAAAACGCCA GCAACGCGGC CTTTTTACGG TTCCTGGCCT TTTGCTGGCC TTTTGCTCAC 5881 ATGTTCTTAA TTAAATTTTT CAAAAGTAGT TGACAATTAA TCATCGGCAT AGTATATCGG 5941 CATAGTATAA TACGACTCAC TATAGGAGGG CCATCATGGC CAAGTTGACC AGTGCTGTCC 6001 CAGTGCTCAC AGCCAGGGAT GTGGCTGGAG CTGTTGAGTT CTGGACTGAC AGGTTGGGGT 6061 TCTCCAGAGA TTTTGTGGAG GATGACTTTG CAGGTGTGGT CAGAGATGAT GTCACCCTGT 6121 TCATCTCAGC AGTCCAGGAC CAGGTGGTGC CTGACAACAC CCTGGCTTGG GTGTGGGTGA 6181 GAGGACTGGA TGAGCTGTAT GCTGAGTGGA GTGAGGTGGT CTCCACCAAC TTCAGGGATG 6241 CCAGTGGCCC TGCCATGACA GAGATTGGAG AGCAGCCCTG GGGGAGAGAG TTTGCCCTGA 6301 GAGACCCAGC AGGCAACTGT GTGCACTTTG TGGCAGAGGA GCAGGACTGA GGATAAGAAT 6361 TGTAACAAAA AACCCCGCCC CGGCGGGGTT TTTTGTTAAT TAATAYYTNW SNGCNGTNGA 6421 YGTNTGYGGN ATGTTYACNA AYMGNWSNGG NWSNCARCAR TGGMGNGGNY TNWSNMGNTA 6481 YTTY //