LOCUS p11Lw 6102 bp ss-DNA circular SYN 26-Apr-2003 DEFINITION - ACCESSION - KEYWORDS - SOURCE - COMMENT Plasmid from Blueheron biotechnology. Used for cloning codon optimized genes into it. FEATURES Location/Qualifiers promoter 113..310 /note=EF-1alpha promoter core promoter 113..1291 /note=EF1a promoter and UTR exon 311..343 /note=EF-1a exon 1 intron 344..1283 /note=EF-1a intron A exon 1283..1291 /note=EF-1a exon 2 leader CDS 1362..2867 /note=Muller's humanized HPV11 L1 mRNA 2919..>3507 /note=WPRE polyA_signal 3555..>3780 /note=SV40 late polyA rep_origin 3781..4535 /note=MB1 ori promoter 4710..4884 /note=SV40 early promoter repeat_region 4710..4773 /note=SV40 21 bp repeats rep_origin 4733..4884 /note=SV40 ori mRNA 4782..4831 /note=SV40 transcription start points promoter 4919..4974 /note=EM7 CDS 4994..5788 /note=Kan/Neo resistance polyA_signal 5836..6102 /note=HSV TK pA signal polyA_site 5894..5912 /note=HSV TK pA site misc_recomb 1299..1304 /note=deleted Xba-Xba fragment (error in original map) BASE COUNT 1296 A 1729 C 1746 G 1331 T 0 OTHER ORIGIN ? 1 CCGCTACCGG ACTCAGATCT CGAGCTCAAG CTTGCAAAGA TGGATAAAGT TTTAAACAGA 61 GAGGAATCTT TGCAGCTAAT GGACCTTGTA GGTCTTGAAA GGAGTGGGAA TTGGCTCCGG 121 TGCCCGTCAG TGGGCAGAGC GCACATCGCC CACAGTCCCC GAGAAGTTGG GGGGAGGGGT 181 CGGCAATTGA ACCGGTGCCT AGAGAAGGTG GCGCGGGGTA AACTGGGAAA GTGATGTCGT 241 GTACTGGCTC CGCCTTTTTC CCGAGGGTGG GGGAGAACCG TATATAAGTG CAGTAGTCGC 301 CGTGAACGTT CTTTTTCGCA ACGGGTTTGC CGCCAGAACA CAGGTAAGTG CCGTGTGTGG 361 TTCCCGCGGG CCTGGCCTCT TTACGGGTTA TGGCCCTTGC GTGCCTTGAA TTACTTCCAC 421 CTGGCTGCAG TACGTGATTC TTGATCCCGA GCTTCGGGTT GGAAGTGGGT GGGAGAGTTC 481 GAGGCCTTGC GCTTAAGGAG CCCCTTCGCC TCGTGCTTGA GTTGAGGCCT GGCCTGGGCG 541 CTGGGGCCGC CGCGTGCGAA TCTGGTGGCA CCTTCGCGCC TGTCTCGCTG CTTTCGATAA 601 GTCTCTAGCC ATTTAAAATT TTTGATGACC TGCTGCGACG CTTTTTTTCT GGCAAGATAG 661 TCTTGTAAAT GCGGGCCAAG ATCTGCACAC TGGTATTTCG GTTTTTGGGG CCGCGGGCGG 721 CGACGGGGCC CGTGCGTCCC AGCGCACATG TTCGGCGAGG CGGGGCCTGC GAGCGCGGCC 781 ACCGAGAATC GGACGGGGGT AGTCTCAAGC TGGCCGGCCT GCTCTGGTGC CTGGCCTCGC 841 GCCGCCGTGT ATCGCCCCGC CCTGGGCGGC AAGGCTGGCC CGGTCGGCAC CAGTTGCGTG 901 AGCGGAAAGA TGGCCGCTTC CCGGCCCTGC TGCAGGGAGC TCAAAATGGA GGACGCGGCG 961 CTCGGGAGAG CGGGCGGGTG AGTCACCCAC ACAAAGGAAA AGGGCCTTTC CGTCCTCAGC 1021 CGTCGCTTCA TGTGACTCCA CGGAGTACCG GGCGCCGTCC AGGCACCTCG ATTAGTTCTC 1081 GAGCTTTTGG AGTACGTCGT CTTTAGGTTG GGGGGAGGGG TTTTATGCGA TGGAGTTTCC 1141 CCACACTGAG TGGGTGGAGA CTGAAGTTAG GCCAGCTTGG CACTTGATGT AATTCTCCTT 1201 GGAATTTGCC CTTTTTGAGT TTGGATCTTG GTTCATTCTC AAGCCTCAGA CAGTGGTTCA 1261 AAGTTTTTTT CTTCCATTTC AGGTGTCGTG AGGAATTCTC TAGAACTAGT GGATCCACTA 1321 GTAACGGCCG CCAGTGTGCT GGAATTCGCC CTTCGGAATT CATGTGGAGA CCCAGCGACA 1381 GCACCGTGTA CGTGCCCCCC CCCAACCCCG TGAGCAAGGT GGTGGCCACC GACGCCTACG 1441 TGAAGAGAAC CAACATCTTC TACCACGCCA GCAGCAGCAG ACTGCTGGCC GTGGGCCACC 1501 CCTACTACAG CATCAAGAAG GTGAACAAGA CCGTGGTGCC CAAGGTGAGC GGCTACCAGT 1561 ACAGAGTGTT CAAGGTGGTG CTGCCCGACC CCAACAAGTT CGCCCTGCCC GACAGCAGCC 1621 TGTTCGACCC CACCACCCAG AGACTGGTGT GGGCCTGCAC CGGCCTGGAG GTGGGCAGAG 1681 GCCAGCCCCT GGGCGTGGGC GTGAGCGGCC ACCCCCTGCT GAACAAGTAC GACGACGTGG 1741 AGAACAGCGG CGGCTACGGC GGCAACCCCG GCCAGGACAA CAGAGTGAAC GTGGGCATGG 1801 ACTACAAGCA GACCCAGCTG TGCATGGTGG GCTGCGCCCC CCCCCTGGGC GAGCACTGGG 1861 GCAAGGGCAC CCAGTGCAGC AACACCAGCG TGCAGAACGG CGACTGCCCC CCCCTGGAGC 1921 TGATCACCAG CGTGATCCAG GACGGCGACA TGGTGGACAC CGGCTTCGGC GCCATGAACT 1981 TCGCCGACCT GCAGACCAAC AAGAGCGACG TGCCCCTGGA CATCTGCGGC ACCGTGTGCA 2041 AGTACCCCGA CTACCTGCAG ATGGCCGCCG ACCCCTACGG CGACAGACTG TTCTTCTACC 2101 TGAGAAAGGA GCAGATGTTC GCCAGACACT TCTTCAACAG AGCCGGCACC GTGGGCGAGC 2161 CCGTGCCCGA CGACCTGCTG GTGAAGGGCG GCAACAACAG AAGCAGCGTG GCCAGCAGCA 2221 TCTACGTGCA CACCCCCAGC GGCAGCCTGG TGAGCAGCGA GGCCCAGCTG TTCAACAAGC 2281 CCTACTGGCT GCAGAAGGCC CAGGGCCACA ACAACGGCAT CTGCTGGGGC AACCACCTGT 2341 TCGTGACCGT GGTGGACACC ACCAGAAGCA CCAACATGAC CCTGTGCGCC AGCGTGAGCA 2401 AGAGCGCCAC CTACACCAAC AGCGACTACA AGGAGTACAT GAGACACGTG GAGGAGTTCG 2461 ACCTGCAGTT CATCTTCCAG CTGTGCAGCA TCACCCTGAG CGCCGAGGTG ATGGCCTACA 2521 TCCACACCAT GAACCCCAGC GTGCTGGAGG ACTGGAACTT CGGCCTGAGC CCCCCCCCCA 2581 ACGGCACCCT GGAGGACACC TACAGATACG TGCAGAGCCA GGCCATCACC TGCCAGAAGC 2641 CCACCCCCGA GAAGGAGAAG CAGGACCCCT ACAAGGACAT GAGCTTCTGG GAGGTGAACC 2701 TGAAGGAGAA GTTCAGCAGC GAGCTGGACC AGTTCCCCCT GGGCAGAAAG TTCCTGCTGC 2761 AGAGCGGCTA CAGAGGCAGA ACCAGCGCCA GAACCGGCAT CAAGAGACCC GCCGTGAGCA 2821 AGCCCAGCAC CGCCCCCAAG AGAAAGAGAA CCAAGACCAA GAAGTGAAAG CTTTTTGAAT 2881 TCTTTGGATC CACTAGTGTC GATATCAAGC TTATCGATAA TCAACCTCTG GATTACAAAA 2941 TTTGTGAAAG ATTGACTGGT ATTCTTAACT ATGTTGCTCC TTTTACGCTA TGTGGATACG 3001 CTGCTTTAAT GCCTTTGTAT CATGCTATTG CTTCCCGTAT GGCTTTCATT TTCTCCTCCT 3061 TGTATAAATC CTGGTTGCTG TCTCTTTATG AGGAGTTGTG GCCCGTTGTC AGGCAACGTG 3121 GCGTGGTGTG CACTGTGTTT GCTGACGCAA CCCCCACTGG TTGGGGCATT GCCACCACCT 3181 GTCAGCTCCT TTCCGGGACT TTCGCTTTCC CCCTCCCTAT TGCCACGGCG GAACTCATCG 3241 CCGCCTGCCT TGCCCGCTGC TGGACAGGGG CTCGGCTGTT GGGCACTGAC AATTCCGTGG 3301 TGTTGTCGGG GAAATCATCG TCCTTTCCTT GGCTGCTCGC CTGTGTTGCC ACCTGGATTC 3361 TGCGCGGGAC GTCCTTCTGC TACGTCCCTT CGGCCCTCAA TCCAGCGGAC CTTCCTTCCC 3421 GCGGCCTGCT GCCGGCTCTG CGGCCTCTTC CGCGTCTTCG CCTTCGCCCT CAGACGAGTC 3481 GGATCTCCCT TTGGGCCGCC TCCCCGCATC GATACCGTCG GCCGCTTCCC TTTAGTGAGG 3541 GTTAATGCTT CGAGCAGACA TGATAAGATA CATTGATGAG TTTGGACAAA CCACAACTAG 3601 AATGCAGTGA AAAAAATGCT TTATTTGTGA AATTTGTGAT GCTATTGCTT TATTTGTAAC 3661 CATTATAAGC TGCAATAAAC AAGTTAACAA CAACAATTGC ATTCATTTTA TGTTTCAGGT 3721 TCAGGGGGAG GTGTGGGAGG TTTTTTAAAG CAAGTAAAAC CTCTACAAAT GTGGTATGGA 3781 ATTCTTAATT AACTAGCCAT GACCAAAATC CCTTAACGTG AGTTTTCGTT CCACTGAGCG 3841 TCAGACCCCG TAGAAAAGAT CAAAGGATCT TCTTGAGATC CTTTTTTTCT GCGCGTAATC 3901 TGCTGCTTGC AAACAAAAAA ACCACCGCTA CCAGCGGTGG TTTGTTTGCC GGATCAAGAG 3961 CTACCAACTC TTTTTCCGAA GGTAACTGGC TTCAGCAGAG CGCAGATACC AAATACTGTT 4021 CTTCTAGTGT AGCCGTAGTT AGGCCACCAC TTCAAGAACT CTGTAGCACC GCCTACATAC 4081 CTCGCTCTGC TAATCCTGTT ACCAGTGGCT GCTGCCAGTG GCGATAAGTC GTGTCTTACC 4141 GGGTTGGACT CAAGACGATA GTTACCGGAT AAGGCGCAGC GGTCGGGCTG AACGGGGGGT 4201 TCGTGCACAC AGCCCAGCTT GGAGCGAACG ACCTACACCG AACTGAGATA CCTACAGCGT 4261 GAGCTATGAG AAAGCGCCAC GCTTCCCGAA GGGAGAAAGG CGGACAGGTA TCCGGTAAGC 4321 GGCAGGGTCG GAACAGGAGA GCGCACGAGG GAGCTTCCAG GGGGAAACGC CTGGTATCTT 4381 TATAGTCCTG TCGGGTTTCG CCACCTCTGA CTTGAGCGTC GATTTTTGTG ATGCTCGTCA 4441 GGGGGGCGGA GCCTATGGAA AAACGCCAGC AACGCGGCCT TTTTACGGTT CCTGGCCTTT 4501 TGCTGGCCTT TTGCTCACAT GTTCTTAATT AAGCTGTACA CTGTGGAATG TGTGTCAGTT 4561 AGGGTGTGGA AAGTCCCCAG GCTCCCCAGC AGGCAGAAGT ATGCAAAGCA TGCATCTCAA 4621 TTAGTCAGCA ACCAGGTGTG GAAAGTCCCC AGGCTCCCCA GCAGGCAGAA GTATGCAAAG 4681 CATGCATCTC AATTAGTCAG CAACCATAGT CCCGCCCCTA ACTCCGCCCA TCCCGCCCCT 4741 AACTCCGCCC AGTTCCGCCC ATTCTCCGCC CCATGACTGA CTAATTTTTT TTATTTATGC 4801 AGAGGCCGAG GCCGCCTCTG CCTCTGAGCT ATTCCAGAAG TAGTGAGGAG GCTTTTTTGG 4861 AGGCCTAGGC TTTTGCAAAA AGCTCCCGGG AGCTTGTATA TCCATTTTCG GATCTGATCA 4921 GCACGTGTTG ACAATTAATC ATCGGCATAG TATATCGGCA TAGTATAATA CGACTCACTA 4981 TAGGAGGGCC ACCATGATTG AACAAGATGG ATTGCACGCA GGTTCTCCGG CCGCTTGGGT 5041 GGAGAGGCTA TTCGGCTATG ACTGGGCACA ACAGACAATC GGCTGCTCTG ATGCCGCCGT 5101 GTTCCGGCTG TCAGCGCAGG GGCGCCCGGT TCTTTTTGTC AAGACCGACC TGTCCGGTGC 5161 CCTGAATGAA CTGCAAGACG AGGCAGCGCG GCTATCGTGG CTGGCCACGA CGGGCGTTCC 5221 TTGCGCAGCT GTGCTCGACG TTGTCACTGA AGCGGGAAGG GACTGGCTGC TATTGGGCGA 5281 AGTGCCGGGG CAGGATCTCC TGTCATCTCA CCTTGCTCCT GCCGAGAAAG TATCCATCAT 5341 GGCTGATGCA ATGCGGCGGC TGCATACGCT TGATCCGGCT ACCTGCCCAT TCGACCACCA 5401 AGCGAAACAT CGCATCGAGC GAGCACGTAC TCGGATGGAA GCCGGTCTTG TCGATCAGGA 5461 TGATCTGGAC GAAGAGCATC AGGGGCTCGC GCCAGCCGAA CTGTTCGCCA GGCTCAAGGC 5521 GAGCATGCCC GACGGCGAGG ATCTCGTCGT GACACATGGC GATGCCTGCT TGCCGAATAT 5581 CATGGTGGAA AATGGCCGCT TTTCTGGATT CATCGACTGT GGCCGGCTGG GTGTGGCGGA 5641 CCGCTATCAG GACATAGCGT TGGCTACCCG TGATATTGCT GAAGAGCTTG GCGGCGAATG 5701 GGCTGACCGC TTCCTCGTGC TTTACGGTAT CGCCGCTCCC GATTCGCAGC GCATCGCCTT 5761 CTATCGCCTT CTTGACGAGT TCTTCTGAGC GGGACTCTGG GGTTCGAAAT GACCGACCAA 5821 GCGAATTCGC TAGAGGGAGG CTAACTGAAA CACGGAAGGA GACAATACCG GAAGGAACCC 5881 GCGCTATGAC GGCAATAAAA AGACAGAATA AAACGCACGG TGTTGGGTCG TTTGTTCATA 5941 AACGCGGGGT TCGGTCCCAG GGCTGGCACT CTGTCGATAC CCCACCGAGA CCCCATTGGG 6001 GCCAATACGC CCGCGTTTCT TCCTTTTCCC CACCCCACCC CCCAAGTTCG GGTGAAGGCC 6061 CAGGGCTCGC AGCCAACGTC GGGGCGGCAG GCCCTGCCAT AG //