LOCUS pwM2m 6627 bp ss-DNA circular SYN 17-JUN-2003 DEFINITION - ACCESSION - KEYWORDS - SOURCE - FEATURES Location/Qualifiers misc_feature complement(<49..57) /note=SV40 minor late 19S RNA enhancer 71..213 /note=SV40 enhancer elements misc_feature 218..281 /note=SV40 21bp repeats rep_origin 238..>373 /note=SV40 Ori mRNA 287..293 /note=late-early transcription startpoints mutation 307..307 /note=G->A kills SELP ATG mRNA 327..333 /note=early-early transcription start points CDS 407..1132 /note=Merkel VP2 polyA_signal 1170..>1391 /note=SV40 Late PolyA promoter <1482..2660 /note=EF1a promoter and UTR exon 1680..1712 /note=EF-1a exon 1 intron 1713..2652 /note=EF-1a intron A exon 2652..2660 /note=EF-1a exon 2 leader insertion_seq 2684..>2708 /note=attB1 CDS 2721..3992 /note=Merkel VP1 misc_recomb 4000..>4024 /note=attB2 mRNA 4086..>4674 /note=WPRE polyA_signal 4710..5378 /note=hEF1a polyA signal polyA_site 5008..5008 /note=site of polyA addition rep_origin 5379..6112 /note=MB1 Ori promoter 6113..6199 /note=EM7 promoter CDS 6200..6574 /note=Zeocin resistance terminator 6575..6627 /note=terminator (rpmB/G) BASE COUNT 1516 A 1797 C 1804 G 1510 T 0 OTHER ORIGIN ? 1 CCCTGCAGGG CCTGAAATAA CCTCTGAAAG AGGAACTTGG TTAGGTACCT GTGGAATGTG 61 TGTCAGTTAG GGTGTGGAAA GTCCCCAGGC TCCCCAGCAG GCAGAAGTAT GCAAAGCATG 121 CATCTCAATT AGTCAGCAAC CAGGTGTGGA AAGTCCCCAG GCTCCCCAGC AGGCAGAAGT 181 ATGCAAAGCA TGCATCTCAA TTAGTCAGCA ACCATAGTCC CGCCCCTAAC TCCGCCCATC 241 CCGCCCCTAA CTCCGCCCAG TTCCGCCCAT TCTCCGCCCC ATGGCTGACT AATTTTTTTT 301 ATTTATACAG AGGCCGAGGC CGCCTCGGCC TCTGAGCTAT TCCAGAAGTA GTGAGGAGGC 361 TTTTTTGGAG GCCTAGGTAC AAAAAAGCAG GCTGCGGCCG CAACAAATGG GCGGGATCAT 421 TACCCTGCTC GCAAACATCG GCGAGATCGC CACCGAGCTG TCCGCAACAA CCGGCGTGAC 481 ACTGGAAGCC ATCTTGACCG GCGAGGCCCT GGCCGCACTC GAGGCCGAGA TTAGTAGCCT 541 GATGACCATC GAAGGCATCA GCGGGATCGA AGCCCTGGCA CAGCTGGGCT TTACCGCCGA 601 GCAATTCAGC AACTTCAGCC TGGTCGCCAG CCTCGTCAAT CAGGGCCTGA CCTACGGGTT 661 CATCTTGCAA ACCGTGTCCG GCATCGGGAG CCTGATCACC GTCGGCGTCC GCCTGAGCAG 721 GGAACAGGTC AGCCTGGTCA ACCGCGACGT CAGCTGGGTC GGCTCCAACG AAGTCCTGCG 781 CCACGCCTTG ATGGCATTCT CACTGGACCC GCTCCAATGG GAGAACAGCC TGCTGCACAG 841 CGTCGGCCAG GACATCTTCA ACAGCCTGAG CCCCACAAGC CGCCTGCAAA TCCAGAGCAA 901 CTTGGTCAAC CTCATCCTGA ACTCAAGATG GGTGTTCCAA ACCACCGCCA GCCAGAACCA 961 GGGGCTGCTG AGCGGCGAAG CCATCCTGAT CCCCGAACAC ATCGGCGGCA CCCTGCAACA 1021 GCAGACACCC GACTGGCTGC TGCCACTGGT GCTGGGGTTG TCCGGCTACA TCAGCCCCGA 1081 GCTGCAAGTC ATCGAGGACG GGACAAAGAA GAAGTCAATC ATTCATCTCT GAGTGCTAGC 1141 ACCCAGCTTT CTTGTACAGC CGCTTCGAGC AGACATGATA AGATACATTG ATGAGTTTGG 1201 ACAAACCACA ACTAGAATGC AGTGAAAAAA ATGCTTTATT TGTGAAATTT GTGATGCTAT 1261 TGCTTTATTT GTAACCATTA TAAGCTGCAA TAAACAAGTT AACAACAACA ATTGCATTCA 1321 TTTTATGTTT CAGGTTCAGG GGGAGGTGTG GGAGGTTTTT TAAAGCAAGT AAAACCTCTA 1381 CAAATGTGGT AAAATCGATA AGGATCCGGG CTGGCGTAAT AGCGAAGAGG CCCGCACCGA 1441 TCGCCCTTCC CAACAGTTGC GGTGGAGAAG AGCATGCGTG AGGCTCCGGT GCCCGTCAGT 1501 GGGCAGAGCG CACATCGCCC ACAGTCCCCG AGAAGTTGGG GGGAGGGGTC GGCAATTGAA 1561 CCGGTGCCTA GAGAAGGTGG CGCGGGGTAA ACTGGGAAAG TGATGTCGTG TACTGGCTCC 1621 GCCCTTTTCC CGAGGGTGGG GGAGAACCGT ATATAAGTGC AGTAGTCGCT GTGAACGTTC 1681 TTTTTCGCAA CGGGTTTGCC GCCAGAACAC AGGTAAGTGC CGTGTGTGGT TCCCGCGGGC 1741 CTGGCCTCTT TACGGGTTAT GGCCCTTGCG TGCCTTGAAT TACTTCCACC TGGCTGCAGT 1801 ACGTGATTCT TGATCCCGAG CTTCGGGTTG GAAGTGGGTG GGAGAGTTCG AGGCCTTGCG 1861 CTTAAGGAGC CCCTTCGCCT CGTGCTTGAG TTGAGGCCTG GCCTGGGCGC TGGGGCCGCC 1921 GCGTGCGAAT CTGGTGGCAC CTTCGCGCCT GTCTCGCTGC TTTCGATAAG TCTCTAGCCA 1981 TTTAAAATTT TTGATGACCT GCTGCGACGC TTTTTTTCTG GCAAGATAGT CTTGTAAATG 2041 CGGGCCAAGA TCTGCACACT GGTATTTCGG TTTTTGGGGC CGCGGGCGGC GACGGGGCCC 2101 GTGCGTCCCA GCGCACATGT TCGGCGAGGC GGGGCCTGCG AGCGCGGCCA CCGAGAATCG 2161 GACGGGGGTA GTCTCAAGCT GGCCGGCCTG CTCTGGTGCC TGGCCTCGCG CCGCCGTGTA 2221 TCGCCCCGCC CTGGGCGGCA AGGCTGGCCC GGTCGGCACC AGTTGCGTGA GCGGAAAGAT 2281 GGCCGCTTCC CGGCCCTGCT GCAGGGAGCT CAAAATGGAG GACGCGGCGC TCGGGAGAGC 2341 GGGCGGGTGA GTCACCCACA CAAAGGAAAA GGGCCTTTCC GTCCTCAGCC GTCGCTTCAT 2401 GTGACTCCAC GGAGTACCGG GCGCCGTCCA GGCACCTCGA TTAGTTCTCG AGCTTTTGGA 2461 GTACGTCGTC TTTAGGTTGG GGGGAGGGGT TTTATGCGAT GGAGTTTCCC CACACTGAGT 2521 GGGTGGAGAC TGAAGTTAGG CCAGCTTGGC ACTTGATGTA ATTCTCCTTG GAATTTGCCC 2581 TTTTTGAGTT TGGATCTTGG TTCATTCTCA AGCCTCAGAC AGTGGTTCAA AGTTTTTTTC 2641 TTCCATTTCA GGTGTCGTGA GGAATTCTCT AGAGCTTGAT CAAACAAGTT TGTACAAAAA 2701 AGCAGGCTTC CGGAGCCACC ATGGCCCCGA AGCGCAAGGC CAGCAGTACA TGCAAGACCC 2761 CAAAGCGCCA GTGCATCCCG AAACCCGGCT GTTGTCCCAA CGTCGCAAGC GTCCCGAAGC 2821 TGTTGGTCAA GGGCGGCGTC GAGGTGCTGA GCGTCGTCAC CGGCGAGGAC TCAATCACAC 2881 AAATCGAACT CTACCTCAAC CCACGCATGG GCGTCAACAG TCCCGACTTG CCCACCACCA 2941 GCAATTGGTA CACCTACACC TACGATCTGC AACCCAAAGG CAGCAGCCCG GACCAGCCAA 3001 TCAAAGAGAA CCTGCCCGCC TATTCCGTCG CCCGCGTCAG CCTGCCCATG TTGAACGAAG 3061 ACATCACATG CGATACCCTG CAAATGTGGG AAGCCATCAG CGTCAAGACC GAGGTGGTCG 3121 GCATCAGCAG CCTGATCAAC GTCCACTACT GGGATATGAA GCGCGTCCAC GACTACGGCG 3181 CCGGCATCCC GGTCAGCGGC GTCAACTATC ACATGTTCGC AATCGGCGGC GAGCCGTTGG 3241 ACCTGCAAGG GCTGGTCCTG GACTATCAGA CCCAGTACCC CAAGACCACC AACGGCGGCC 3301 CCATCACCAT CGAGACCGTG CTCGGCCGCA AGATGACCCC GAAGAACCAG GGGTTGGACC 3361 CACAAGCCAA GGCCAAGCTG GACAAGGACG GCAACTACCC CATCGAGGTC TGGTGCCCCG 3421 ACCCGAGCAA GAACGAGAAT TCCCGCTACT ACGGCAGCAT CCAAACCGGG AGCCAGACCC 3481 CGACCGTGTT GCAGTTCAGC AACACCCTGA CCACCGTGCT GCTGGACGAA AACGGCGTCG 3541 GCCCACTGTG CAAGGGCGAT GGCCTGTTCA TCTCATGCGC CGATATCGTC GGATTCCTGT 3601 TCAAGACATC CGGCAAGATG GCCTTGCACG GCCTGCCACG CTACTTCAAC GTCACCCTGC 3661 GAAAGCGCTG GGTCAAGAAT CCATATCCCG TGGTCAACCT GATCAATAGC TTGTTCAGCA 3721 ATCTGATGCC CAAGGTCAGC GGCCAGCCCA TGGAGGGCAA GGACAACCAA GTGGAGGAAG 3781 TCCGCATCTA CGAAGGCAGC GAGCAGCTGC CCGGCGACCC CGACATCGTG CGGTTCCTGG 3841 ACAAGTTCGG CCAAGAAAAG ACCGTCTATC CCAAACCAAG CGTCGCACCC GCCGCCGTGA 3901 CATTCCAGTC CAACCAGCAA GACAAAGGCA AGGCCCCGCT GAAGGGCCCG CAAAAGGCAA 3961 GCCAGAAGGA GTCACAGACG CAGGAGCTAT GAGCCTAGGA CCCAGCTTTC TTGTACAAAG 4021 TGGTTCGATC TAGAATGGCT AGTGGATCCC CCGGGCTGCA GGAATTCGAT ATCAAGCTTA 4081 TCGATAATCA ACCTCTGGAT TACAAAATTT GTGAAAGATT GACTGGTATT CTTAACTATG 4141 TTGCTCCTTT TACGCTATGT GGATACGCTG CTTTAATGCC TTTGTATCAT GCTATTGCTT 4201 CCCGTATGGC TTTCATTTTC TCCTCCTTGT ATAAATCCTG GTTGCTGTCT CTTTATGAGG 4261 AGTTGTGGCC CGTTGTCAGG CAACGTGGCG TGGTGTGCAC TGTGTTTGCT GACGCAACCC 4321 CCACTGGTTG GGGCATTGCC ACCACCTGTC AGCTCCTTTC CGGGACTTTC GCTTTCCCCC 4381 TCCCTATTGC CACGGCGGAA CTCATCGCCG CCTGCCTTGC CCGCTGCTGG ACAGGGGCTC 4441 GGCTGTTGGG CACTGACAAT TCCGTGGTGT TGTCGGGGAA ATCATCGTCC TTTCCTTGGC 4501 TGCTCGCCTG TGTTGCCACC TGGATTCTGC GCGGGACGTC CTTCTGCTAC GTCCCTTCGG 4561 CCCTCAATCC AGCGGACCTT CCTTCCCGCG GCCTGCTGCC GGCTCTGCGG CCTCTTCCGC 4621 GTCTTCGCCT TCGCCCTCAG ACGAGTCGGA TCTCCCTTTG GGCCGCCTCC CCGCATCGAT 4681 ACCGTCGGCC CACTGCTCCC TAAACCTGAG CTAGCATTAT CCCTAATACC TGCCACCCCA 4741 CTCTTAATCA GTGGTGGAAG AACGGTCTCA GAACTGTTTG TTTCAATTGG CCATTTAAGT 4801 TTAGTAGTAA AAGACTGGTT AATGATAACA ATGCATCGTA AAACCTTCAG AAGGAAAGGA 4861 GAATGTTTTG TGGACCACTT TGGTTTTCTT TTTTGCGTGT GGCAGTTTTA AGTTATTAGT 4921 TTTTAAAATC AGTACTTTTT AATGGAAACA ACTTGACCAA AAATTTGTCA CAGAATTTTG 4981 AGACCCATTA AAAAAGTTAA ATGAGAAACC TGTGTGTTCC TTTGGTCAAC ACCGAGACAT 5041 TTAGGTGAAA GACATCTAAT TCTGGTTTTA CGAATCTGGA AACTTCTTGA AAATGTAATT 5101 CTTGAGTTAA CACTTCTGGG TGGAGAATAG GGTTGTTTTC CCCCCACATA ATTGGAAGGG 5161 GAAGGAATAT CATTTAAAGC TATGGGAGGG TTTCTTTGAT TACAACACTG GAGAGAAATG 5221 CAGCATGTTG CTGATTGCCT GTCACTAAAA CAGGCCAAAA ACTGAGTCCT TGGGTTGCAT 5281 AGAAAGCTTC ATGTTGCTAA ACCAATGTTA AGTGAATCTT TGGAAACAAA ATGTTTCCAA 5341 ATTACTGGGA TGTGCATGTT GAAACGTGGG TTAATTAACT AGCCATGACC AAAATCCCTT 5401 AACGTGAGTT TTCGTTCCAC TGAGCGTCAG ACCCCGTAGA AAAGATCAAA GGATCTTCTT 5461 GAGATCCTTT TTTTCTGCGC GTAATCTGCT GCTTGCAAAC AAAAAAACCA CCGCTACCAG 5521 CGGTGGTTTG TTTGCCGGAT CAAGAGCTAC CAACTCTTTT TCCGAAGGTA ACTGGCTTCA 5581 GCAGAGCGCA GATACCAAAT ACTGTTCTTC TAGTGTAGCC GTAGTTAGGC CACCACTTCA 5641 AGAACTCTGT AGCACCGCCT ACATACCTCG CTCTGCTAAT CCTGTTACCA GTGGCTGCTG 5701 CCAGTGGCGA TAAGTCGTGT CTTACCGGGT TGGACTCAAG ACGATAGTTA CCGGATAAGG 5761 CGCAGCGGTC GGGCTGAACG GGGGGTTCGT GCACACAGCC CAGCTTGGAG CGAACGACCT 5821 ACACCGAACT GAGATACCTA CAGCGTGAGC TATGAGAAAG CGCCACGCTT CCCGAAGGGA 5881 GAAAGGCGGA CAGGTATCCG GTAAGCGGCA GGGTCGGAAC AGGAGAGCGC ACGAGGGAGC 5941 TTCCAGGGGG AAACGCCTGG TATCTTTATA GTCCTGTCGG GTTTCGCCAC CTCTGACTTG 6001 AGCGTCGATT TTTGTGATGC TCGTCAGGGG GGCGGAGCCT ATGGAAAAAC GCCAGCAACG 6061 CGGCCTTTTT ACGGTTCCTG GCCTTTTGCT GGCCTTTTGC TCACATGTTC TTAATTAAAT 6121 TTTTCAAAAG TAGTTGACAA TTAATCATCG GCATAGTATA TCGGCATAGT ATAATACGAC 6181 TCACTATAGG AGGGCCATCA TGGCCAAGTT GACCAGTGCT GTCCCAGTGC TCACAGCCAG 6241 GGATGTGGCT GGAGCTGTTG AGTTCTGGAC TGACAGGTTG GGGTTCTCCA GAGATTTTGT 6301 GGAGGATGAC TTTGCAGGTG TGGTCAGAGA TGATGTCACC CTGTTCATCT CAGCAGTCCA 6361 GGACCAGGTG GTGCCTGACA ACACCCTGGC TTGGGTGTGG GTGAGAGGAC TGGATGAGCT 6421 GTATGCTGAG TGGAGTGAGG TGGTCTCCAC CAACTTCAGG GATGCCAGTG GCCCTGCCAT 6481 GACAGAGATT GGAGAGCAGC CCTGGGGGAG AGAGTTTGCC CTGAGAGACC CAGCAGGCAA 6541 CTGTGTGCAC TTTGTGGCAG AGGAGCAGGA CTGAGGATAA GAATTGTAAC AAAAAACCCC 6601 GCCCCGGCGG GGTTTTTTGT TAATTAA //