LOCUS pe2S 7088 bp ss-DNA circular SYN 17-Jun-2003 DEFINITION - ACCESSION - KEYWORDS - SOURCE - FEATURES Location/Qualifiers terminator 1..44 /note=rrnB T1 terminator primer_bind 119..140 /note=Asylum-L primer primer_bind 191..206 /note=M13 priming site misc_recomb 224..322 /note=attL1 source 323..5274 /note=Human polyomavirus 7 isolate 713a CDS 323..943 /note=VP2 [split] misc_recomb 323..328 /note=Mfe1 CDS 873..2015 /note=VP1 CDS join(complement(2100..3869),complement(4275..4520)) /note=Large T antigen protein_bind complement(2874..2888) /note=CR1 motif (LXXLL)(Pipas92) misc_binding complement(3753..3794) /note=Rb binding DLXCXEXXXXSDEE protein_bind complement(3822..3836) /note=Bub1 binding motif (WEXWW) intron complement(3870..4274) /note=putative Large T antigen intron CDS complement(3939..4520) /note=small t antigen protein_bind complement(4056..4073) /note=PP2A binding motif (CXCXXC)(Sariyer09) protein_bind complement(4149..4166) /note=PP2A binding motif (CXCXXC)(Sariyer09) protein_bind complement(4380..4397) /note=DNAJ motif (HPDKGG)(Whalen05) protein_bind complement(4464..4496) /note=CR1 (EXXXLXELXXL)(Pipas92) protein_bind 4607..4614 /note=JCV repeat (Martin85) CDS <4906..>5280 /note=VP2 [split] misc_recomb 5275..5280 /note=Mfe1 misc_recomb 5281..5379 /note=attL2 primer_bind complement(5495..5516) /note=Asylum-R primer terminator complement(5540..5592) /note=rpm B/G terminator CDS complement(5593..5967) /note=Zeo promoter complement(5968..6054) /note=EM7 promoter rep_origin 6055..6788 /note=MB1 Ori rRNA 6966..7085 /note=rrnB 5S rRNA (fragment) BASE COUNT 1953 A 1634 C 1541 G 1960 T 0 OTHER ORIGIN ? 1 ATAAAACGAA AGGCTCAGTC GAAAGACTGG GCCTTTCGTT TTATCTGTTG TTTGTCGGTG 61 AACGCTCTCC TGAGTAGGAC AAATCCGCCG GGAGAACAAC AACAATTGCA TTCATTTTAT 121 GTTTCAGGTT CAGGGGGAGG TGTGGGAGGT TTTTTAACGC TAGCATGGAT GTTTTCCCAG 181 TCACGACGTT GTAAAACGAC GGCCAGTCTT AAGCTCGGGC CCCAAATAAT GATTTTATTT 241 TGACTGATAG TGACCTGTTC GTTGCAACAA ATTGATGAGC AATGCTTTTT TATAATGCCA 301 ACTTTGTACA AAAAAGCAGG CTCAATTGTG GTTGCCACAA GCGTGGCCTT GGGGAGGCGC 361 AGCTGGAGGT GTCCCCGATT GGCTCCTTGA GGTGCTTCGT GAAGTGCCTA CTCCCTCAGA 421 GATCCTCTAT AACATTGCCA GAGGAATCTG GACTTCCTAC TACAGAACAG GAAGAGAGTT 481 AATACAAAGA ACTGCTACTA GGGAATTGGC AAGCCTGTTG AGTAGACTAA GGCAGAATAT 541 TATAAATGGG GCTAATAGAG CTATAGAAAT GGCTCCAGAC CCTGTACAAG GCCTTCTAAA 601 TCTAATAAAT CAGGCCATTG CCTACAATAG GGACTGGGAA ACTAGGGCTC TCCTTGAGGG 661 GAGGCCATTG TTTGAACCAG GGGGTGTTGT CATGTATGAC ACACAAAATC TGCCACTCAG 721 TGGAAATAAT GACCAGAGGG GAGGGTTTCA TGATGAAGGA ACATGGGTTA GTTTCCAAGG 781 GGAGGAAGGA AACACTCCCC AGTATACTAT ACCTCAATGG ATGCTTTTTG TTCTTGAGGA 841 GCTACAAAAA GAAGTGAATA AGGAGAATAA ACATGCCCTG TCAAAGAAAA GGAAATGGAC 901 CCACACAGAA ACTTCCCAGA GTGATAAGAA AAGGAGGCGT TGAAGTTTTG GATACAGTAC 961 CACTCACTGA GGAAACACAG TACAAAGTTG AAGCAGTGTT GCTGCCAAAC TTTGGAAAAG 1021 CAGCTACAAC TGGGAACTTT CAATCTAGAG GCCTACCTTA TCCTATGAGT GACACTCTGG 1081 GGCCGGGGGC TGCTTTGTGT TACTCTGTTG CTGTTATTAA TTTGCCTGAA ATTCCTGATG 1141 CCATGTGTGA GGACACAATG ATTGTTTGGG AGGCCTATAG GCTGGAAACA GAACTTCTAT 1201 TTGCTCCACA AATGGCTAGT TCTGGTTATC AAAGGGCTAA TGGCACTCTA GCTGGAACAG 1261 AGGGCAGTCA ACTATACTTC TGGGCCTGTG GAGGAGGCCC CTTGGATGTA ATTGGAATTA 1321 ACCCTGACCC TGAAAGGCTA AAGGTCAATG AAGCCCTAGA AGGTCCAGGC AATACTGATG 1381 TAGCTAGCCT GCAAGCCCTC AGAAAGCAAG TAAATGCTGC AAATTTCCCA GTAGAGCTCT 1441 GGGTTGCAGA TCCCACAAAA AATGATAATA CCAGATACTT TGGCAGAGTG GTTGGAGGGG 1501 GAGTAACCCC TCCAGTTGTG TCCTATGGGA ATCAGAGTAC CACTCCCCTT ATTGATGAAA 1561 ATGGAGTTGG AATTTTGTGT ACTTTTGGCA GTGTGTATCT TACCAGTGCT GATATGGTTG 1621 GAATGACAGG CCTTCCAGGC CTTCCCACTC TGAGTGCTGA CTACAGTAAC CAGAGAACAG 1681 TACAGGCTGG TTATGGCAGA TTTTTTAGAG TCCACTGCAG ACAAAGAAGA ATTAAGCACC 1741 CCTACACAGT GGATATGATG TTTAGACAGT TTCTGCAGCC CCAGAAGCCA CAGGTGCAGG 1801 GGCAGCAACC TGCTGCAGTG CAAGAAGTTA CAATGGAGCA AATGCAGCCT GCTACTATCC 1861 CTCCAACTGT TGAGGGAGGC CTTGGCTTTG CTCCCACCAG TAAGTTTCTG ATCCAAAATG 1921 GAGAGCTTAT TTATCCCAGC AGCAATGCTG CTGCAGCAGC TGCAAAAATA TCTGTAGCCC 1981 CAAAGAAAAA CACAGACAAC AAGAAGGAAT TGTAACCATT TTATTAAACT TATTCCAGTG 2041 GAATACAAAG CATATGCTGG GTAATTTCTA GAAATGAAAA GTTTTATTGT ATCAATAAAC 2101 TAGTTATTCA TAGAACCAAT ACCAGACTCT GTACTTTCTT GGGTTTCCCT GGTATTTTCC 2161 TCTGTGGGAT CATTAATGAG CACACCCTCA AAAGGGTCTT TACCTGATAA AATATTCTCC 2221 TTCATAGTTT GAAACATTCC ATATGAAACC CACTGTTCAA ATGTTTGTTT CCAATTAACT 2281 ACCTCTTCTT GTATTTCTTC AACAAAGTCA GACACTGGTT CCCACCAAAT GAGAGCAGCT 2341 AGCAATGTAC ACCCTTTTTG CAAAAGCCTT TTTTTCATTA AAATAGGGTT TGCATCCAAG 2401 CTTTTTTTAA GGCCTGGTTT ATGCAAAAAG TAGTAGCCTT TTGCTACTCT TGCCTTCACT 2461 GTTGTTGGAA TAGCATATTC ATTACAAGTT ATTATACAAG GGGGAAACAG CTGAGATGTT 2521 TTATTAATAT GCTTCCTTTC CAAATTCACT GGTACACACC CATCTAAATA ATCCCTCATA 2581 TTATCAAGAT TTGCCATCCC AACACCTGAA GGTAAATCTG TGTTAGGCAG GGGTGTTCCC 2641 TTTACATCCT CAATTACCAC CATGTACTTA TCAATAGCAC ATCCCAGTTC AAAGTTTATC 2701 TTGTCACTGC TACAATTTAC ATTTAATGCC ACCCCTCCTA GTAAATCCAG AATGGCAGCT 2761 GCTAAGGTTG TTTTCCCACT GTTGATAGGC CCTTTAAACA ATAGGTTTCT TCTTTTGGGG 2821 GTGTTTTCTA CTAAGTAGGA CAGCATCTCT TTAATTTTAA TAGTGAACTG TGGCAATAGG 2881 CAGTCTAACC AGGCCACTGC TCCTATTAAT TGAGTTATTT CAACACCCCC TCCAAACTGC 2941 TCTGCCAGCA CTTTGAATTG TTTCTTAAAT GACATAACCA TGAGATCTTT CCTAGTAGAT 3001 TCCATCATAA GAACCCTTCT GGCAGCTAAA ACTCTATCAG CAGCTTGCTG AGCAATTCCC 3061 TTTTGATTTT TAGCAGTTTT AAACAGTTTA GCATTGGCCC AGTGCTTCTC ATGGTGTTGG 3121 TGGGCCTTCA CTGACTTTAA ACACTTAGGA CATAGTGATG GCTCTGTAGC AAATTCCATA 3181 TAATATCCCA TAATAAGTAA CACATCAGTT AATTCCATGT CTGCTGCAAA ATCTGCTACA 3241 AAATTCCAGT CACAGTCATC TTTTTTAGAA GCTTCTTGAA AATCATAAGA GTGAAGGCCT 3301 CCTTCCTTTG ACTCTCTTAA CACAGCAAAT TTAGAATCTT GTAAGGCCTT ATAACATTCA 3361 GCATTTTTTA ACACAGCTTT TACCATAATA AAAGAAACAG TACAGTGTTT TTTACAAGCA 3421 TTTAAAATAG CTGATACCCT ATGTCTGCTT CCACTAATAA AAAACACCAG GGCACCACTA 3481 CCATCTACAC AGTTGTAGGC CCCAATAAAC AGAGCATTAA ACTCAACACC TAATTTCTCA 3541 TAAAGCAACA TACTTTTCTC ATAAGTTGTG TAGCACAAAA AGCAGGTATA GCACTTGTTA 3601 CCTAAAGTAG CATGGCTTAA AAACTCAGAC AGGCATTCAG GAAAGTCTTG GGGAGCTGGA 3661 TTAGGCTTTT TTTGCTTAGG AGGGGTGGCA GAATATTTAC TATCTTGGCT GCATCCCTCC 3721 TCAGGATTCA CAGAAGCAGA TGCTGCAGGT TCTTCTTCAT CAGATGATGA CAGCTCTTCT 3781 GTACAGTAAA GATCTTCATC CCATCCCTTG TTGAAGTCCT GCCACCATTG GTCCCACGCA 3841 GGGCTTCCAT ATGGGGGCGG AGGTCTCACC TACAAAAAGA TAATTAGTAA GGTTGCTTTG 3901 TTTACTCCCC TTAGTCAGGC TTTTAGGCCT TGGATTACTT ACAGTAGATT TAGCTGTCCC 3961 CAAAGGTTAA GTACATCCAT TGGAGTTTGG AAAATAATGT GGCTCCACCA CATAAAGGAT 4021 TCCTCAGATC TTTCTACTCC AAACCAGTCT AAATAGCAGT CAAAGCACCA GCATTTGCCC 4081 CATAAAAGAG GCCCCCGGTG GTCTTTAGCA TACTCTTTGG CCTTCTTCTT ATGCTTTCTC 4141 TTTAAAATGC AATGAATACA ACAGCAGGCT CTTAAACCTT GCACTACACA CAAATTGTAG 4201 TTCCACACCT TTTTTCTGTT AAACTCTGGC CCCAAAAACT CCCCTACAGT CAATTCTATA 4261 TCCCAAAAAC TGACCTCATC AGAGCTGTAA TGCCACATGG GGCTTCCAGA CCTTTGATCT 4321 CTCAAAGTAG CTTGCAGCTT GTCTTTTAAG ACATTCAGTC TTTGCATTTT CTGGGGATCT 4381 CCACCTTTAT CTGGATGATA CTTTTTGCTG GCTAATCTAA CCTTATGCTG TATGAGGGGC 4441 AAATTCCCCC AACAGGCCAT GTTCAGGCCT ATTAATTCCA TAAGCTCCTT GACTTCATCT 4501 CTACCTAAAA GCTTGTCCAT TTTCCCTTTC TCTCTGTAAT TTCTGAAGAG AAAGTGGTGG 4561 CAGGTGCAGC TGACACCCTT TAAATAGTCT TCTCTCTGCA ATAGAAGGGT GGAGGCAAGA 4621 GGCCACCAAG CCACCTACAT TAGGAAAAAA AAGGTGGAGG AGGAAATGTC TGGGTTACTG 4681 GGTCAGACAG GATATGATTA GCATAATATT AGCCCGCCAA AAGCTGTGGT TTTTATGCAG 4741 ATGAGGTGTG ACCTTTGGTG GAGGACCTAT CTCTCTATCT GTAAGTAAGA ATTTTTCACT 4801 TTTTAACAAA TTTTAACCTC TTAGTAACTG TAGTGTTCTC TCTCCTCAGA AAGTCCTTGA 4861 TATTGTTGGC CATTTGGGTG CTGTGTCAAG GACTTAGGTA AGAGAATGGG TATTTTGTTA 4921 AGTATTCCTG AGATCATTGC AGCTACTGCT ATTGGTGGAG GGGAGGCCTT GGAAATTGCT 4981 GGAAGTGTAG GAGCTTTGGT GTCTGGAGAG GGATTGGCCA CCTTGGAAGC CCTTCAAAGT 5041 GCTGCTGCTC TATCTACTGA GGCCACAGCT GCTCTGGCAG TGTCCAATGA AGCTGCTATA 5101 GTATTATCTA CTATTCCTGA ATTATCCCAG ACCTTGTTTG GAGTCCAAAC CTTACTATCT 5161 TCTGTGGCAG GTGTTGGTGG TGTAGTATAC AACCTAAATC CTGGGGAACT GTACCAGGCG 5221 CCCGAGGGAC CAGGTGGACT CGGCCCAAGA ATTGGAAGCA CAACCATGGC ACTTCAATTG 5281 ACCCAGCTTT CTTGTACAAA GTTGGCATTA TAAGAAAGCA TTGCTTATCA ATTTGTTGCA 5341 ACGAACAGGT CACTATCAGT CAAAATAAAA TCATTATTTG CCATCCAGCT GATAAGCAAG 5401 TAAAACCTCT ACAAATGTGG TAAAATCGAT AAGGATCCGG GCTGGCGTAA TAGCGAAGAG 5461 GCCCGCACCG ATCGCCCTTC CCAACAGTTG CGTACCTAAC CAAGTTCCTC TTTCAGAGGT 5521 TATTTCAGGC CCTGCAGGGT TAATTAACAA AAAACCCCGC CGGGGCGGGG TTTTTTGTTA 5581 CAATTCTTAT CCTCAGTCCT GCTCCTCTGC CACAAAGTGC ACACAGTTGC CTGCTGGGTC 5641 TCTCAGGGCA AACTCTCTCC CCCAGGGCTG CTCTCCAATC TCTGTCATGG CAGGGCCACT 5701 GGCATCCCTG AAGTTGGTGG AGACCACCTC ACTCCACTCA GCATACAGCT CATCCAGTCC 5761 TCTCACCCAC ACCCAAGCCA GGGTGTTGTC AGGCACCACC TGGTCCTGGA CTGCTGAGAT 5821 GAACAGGGTG ACATCATCTC TGACCACACC TGCAAAGTCA TCCTCCACAA AATCTCTGGA 5881 GAACCCCAAC CTGTCAGTCC AGAACTCAAC AGCTCCAGCC ACATCCCTGG CTGTGAGCAC 5941 TGGGACAGCA CTGGTCAACT TGGCCATGAT GGCCCTCCTA TAGTGAGTCG TATTATACTA 6001 TGCCGATATA CTATGCCGAT GATTAATTGT CAACTACTTT TGAAAAATTT AATTAAGAAC 6061 ATGTGAGCAA AAGGCCAGCA AAAGGCCAGG AACCGTAAAA AGGCCGCGTT GCTGGCGTTT 6121 TTCCATAGGC TCCGCCCCCC TGACGAGCAT CACAAAAATC GACGCTCAAG TCAGAGGTGG 6181 CGAAACCCGA CAGGACTATA AAGATACCAG GCGTTTCCCC CTGGAAGCTC CCTCGTGCGC 6241 TCTCCTGTTC CGACCCTGCC GCTTACCGGA TACCTGTCCG CCTTTCTCCC TTCGGGAAGC 6301 GTGGCGCTTT CTCATAGCTC ACGCTGTAGG TATCTCAGTT CGGTGTAGGT CGTTCGCTCC 6361 AAGCTGGGCT GTGTGCACGA ACCCCCCGTT CAGCCCGACC GCTGCGCCTT ATCCGGTAAC 6421 TATCGTCTTG AGTCCAACCC GGTAAGACAC GACTTATCGC CACTGGCAGC AGCCACTGGT 6481 AACAGGATTA GCAGAGCGAG GTATGTAGGC GGTGCTACAG AGTTCTTGAA GTGGTGGCCT 6541 AACTACGGCT ACACTAGAAG AACAGTATTT GGTATCTGCG CTCTGCTGAA GCCAGTTACC 6601 TTCGGAAAAA GAGTTGGTAG CTCTTGATCC GGCAAACAAA CCACCGCTGG TAGCGGTGGT 6661 TTTTTTGTTT GCAAGCAGCA GATTACGCGC AGAAAAAAAG GATCTCAAGA AGATCCTTTG 6721 ATCTTTTCTA CGGGGTCTGA CGCTCAGTGG AACGAAAACT CACGTTAAGG GATTTTGGTC 6781 ATGGCTAGTT AATTAACCCA CGTTTCAACA TGCACATCCC AGTAATTTGG AAACATTTTG 6841 TTTCCAAAGA TTCACTTAAC ATTGGTTTAG CAACATGAAG CTTGGCTGTT TTGGCGGATG 6901 AGAGAAGATT TTCAGCCTGA TACAGATTAA ATCAGAACGC AGAAGCGGTC TGATAAAACA 6961 GAATTTGCCT GGCGGCAGTA GCGCGGTGGT CCCACCTGAC CCCATGCCGA ACTCAGAAGT 7021 GAAACGCCGT AGCGCCGATG GTAGTGTGGG GTCTCCCCAT GCGAGAGTAG GGAACTGCCA 7081 GGCATCAA //