LOCUS PADAP-L1P 6076 BP DS-DNA CIRCULAR SYN 10-JAN-1997 DEFINITION - ACCESSION - KEYWORDS - SOURCE - FEATURES Location/Qualifiers promoter 1..795 /note="CMV promoter" CAAT_signal 674..678 /note="CAAT box" TATA_signal 707..713 /note="TATA box" mRNA 736..736 /note="transcription start" intron 857..989 /note="intron" promoter 1034..1052 /note="T7 promoter" CDS 1086..>2574 /note="L1" mutation 1124..1124 /note="CCA not CCC to break up pyrimidine stretch" mutation 1268..1268 /note="not mutated to G to avoid splice donor" mutation 1269..1271 /note="TCC not AGC to avoid splice donor" mutation 1374..1376 /note="this GCC(Ala) is a CCA(Pro) in Zhou's L1" mutation 1395..1397 /note="not AGT to avoid splice donor" mutation 1434..1436 /note="This Pro is a Thr in Zhou's L1" mutation 1478..1478 /note="not mutated to G to avoid splice donor" mutation 1481..1481 /note="not mutated to avoid splice donor" mutation 1490..1490 /note="Not mutated to G to avoid possible splice acceptor" mutation 1590..1590 /note="Not changed to A to avoid strong splice acceptor" mutation 1652..1652 /note="not changed to A to avoid PolyA signal" mutation 1700..1700 /note="not changed to T to avoid AT tract" mutation 1703..1703 /note="not changed to T to avoid AT tract" mutation 1973..1973 /note="C not G to avoid Splice donor" mutation 1976..1976 /note="unchanged to avoid a splice donor" mutation 2303..2303 /note="CCA not CCC to break up possible splice acceptor" mutation 2306..2306 /note="CCA not CCC to break up possible splice acceptor" mutation 2336..2336 /note="A not G to avoid a splice donor" mutation 2571..2573 /note="TAG not TGA to avoid splice donor" mRNA 2624..>3128 /note="HBV PRE" polyA_signal 3179..3400 /note="SV40 polyA" rep_origin 3490..3945 /note="phage f1" promoter 4314..4349 /note="AmpR's promoter" CDS 4384..5244 /note="ampR" rep_origin 5393..6063 /note="ColE1 Ori" BASE COUNT 1493 A 1632 C 1490 G 1461 T 0 OTHER ORIGIN - 1 TCAATATTGG CCATTAGCCA TATTATTCAT TGGTTATATA GCATAAATCA ATATTGGCTA 61 TTGGCCATTG CATACGTTGT ATCTATATCA TAATATGTAC ATTTATATTG GCTCATGTCC 121 AATATGACCG CCATGTTGGC ATTGATTATT GACTAGTTAT TAATAGTAAT CAATTACGGG 181 GTCATTAGTT CATAGCCCAT ATATGGAGTT CCGCGTTACA TAACTTACGG TAAATGGCCC 241 GCCTGGCTGA CCGCCCAACG ACCCCCGCCC ATTGACGTCA ATAATGACGT ATGTTCCCAT 301 AGTAACGCCA ATAGGGACTT TCCATTGACG TCAATGGGTG GAGTATTTAC GGTAAACTGC 361 CCACTTGGCA GTACATCAAG TGTATCATAT GCCAAGTCCG CCCCCTATTG ACGTCAATGA 421 CGGTAAATGG CCCGCCTGGC ATTATGCCCA GTACATGACC TTACGGGACT TTCCTACTTG 481 GCAGTACATC TACGTATTAG TCATCGCTAT TACCATGGTG ATGCGGTTTT GGCAGTACAC 541 CAATGGGCGT GGATAGCGGT TTGACTCACG GGGATTTCCA AGTCTCCACC CCATTGACGT 601 CAATGGGAGT TTGTTTTGGC ACCAAAATCA ACGGGACTTT CCAAAATGTC GTAATAACCC 661 CGCCCCGTTG ACGCAAATGG GCGGTAGGCG TGTACGGTGG GAGGTCTATA TAAGCAGAGC 721 TCGTTTAGTG AACCGTCAGA TCACTAGAAG CTTTATTGCG GTAGTTTATC ACAGTTAAAT 781 TGCTAACGCA GTCAGTGCTT CTGACACAAC AGTCTCGAAC TTAAGCTGCA GAAGTTGGTC 841 GTGAGGCACT GGGCAGGTAA GTATCAAGGT TACAAGACAG GTTTAAGGAG ACCAATAGAA 901 ACTGGGCTTG TCGAGACAGA GAAGACTCTT GCGTTTCTGA TAGGCACCTA TTGGTCTTAC 961 TGACATCCAC TTTGCCTTTC TCTCCACAGG TGTCCACTCC CAGTTCAATT ACAGCTCTTA 1021 AGGCTAGAGT ACTTAATACG ACTCACTATA GGCTAGCCTC GAGAATTCAC GCGTGGTACC 1081 ACACCATGGC CCTCTGGCAG CAGGGGCAGA AACTCTACCT GCCACCCACA CCCGTGTCAA 1141 AAGTCCTGTG TTCCGAGACA TACGTCCAGC GGAAGTCAAT CTTCTACCAC GCCGAGACCG 1201 AAAGGCTCCT CACCATCGGC CACCCCTACT ACCCCGTCAG CATTGGCGCT AAGACCGTGC 1261 CCAAAGTCTC CGCCAACCAA TACCGCGTGT TCAAGATCCA GCTGCCCGAC CCAAACCAGT 1321 TCGCCCTGCC CGATCGCACC GTGCATAACC CCTCCAAGGA AAGACTCGTC TGGGCCGTGA 1381 TCGGCGTCCA AGTCTCACGG GGCCAACCCC TGGGCGGCAC CGTGACCGGC CATCCAACCT 1441 TCAACGCCCT CCTGGACGCC GAGAACGTCA ACCGGAAAGT CACAACACAA ACCACCGACG 1501 ATCGCAAGCA GACCGGGCTG GACGCCAAAC AGCAGCAAAT CCTCCTCCTG GGGTGCACAC 1561 CCGCTGAGGG CGAGTACTGG ACCACCGCTC GGCCCTGCGT GACCGACAGG CTGGAGAACG 1621 GGGCTTGTCC CCCCCTGGAG CTGAAGAATA AGCATATCGA GGACGGCGAC ATGATGGAGA 1681 TCGGCTTCGG CGCCGCTAAC TTCAAGGAGA TCAACGCCTC CAAGAGCGAC CTGCCCCTGG 1741 ATATCCAGAA CGAAATTTGT CTCTATCCCG ATTATCTGAA GATGGCCGAA GATGCCGCCG 1801 GCAACTCAAT GTTTTTCTTC GCCCGCAAGG AGCAAGTCTA CGTGCGGCAT ATTTGGACAC 1861 GGGGCGGGAG CGAAAAGGAG GCTCCCACAA CCGACTTCTA CCTGAAAAAC AACAAGGGCG 1921 ACGCTACACT GAAGATCCCA TCCGTCCACT TCGGCTCCCC ATCCGGGAGC CTCGTCAGCA 1981 CCGACAACCA GATCTTCAAC AGACCATATT GGCTGTTTAG GGCTCAAGGG ATGAATAACG 2041 GCATCGCTTG GAACAACCTG CTCTTCCTGA CCGTCGGCGA TAACACCAGG GGCACCAACC 2101 TGACAATCTC CGTGGCTAGC GACGGCACAC CCCTGACCGA ATACGACTCA AGCAAGTTTA 2161 ACGTGTATCA CCGGCACATG GAGGAGTACA AACTGGCTTT CATCCTGGAA CTGTGTAGCG 2221 TCGAGATTAC CGCCCAGACC GTCAGCCACC TCCAGGGCCT GATGCCAAGC GTCCTGGAGA 2281 ACTGGGAGAT CGGCGTCCAA CCACCAACAA GCAGCATCCT GGAAGATACA TACAGATACA 2341 TCGAAAGCCC CGCCACCAAG TGCGCCTCAA ACGTGATCCC CGCCAAGGAG GATCCCTACG 2401 CCGGCTTCAA ATTCTGGAAT ATCGACCTGA AGGAGAAACT GAGCCTCGAT CTGGACCAGT 2461 TCCCACTCGG CCGGCGGTTC CTGGCCCAAC AGGGCGCTGG CTGCAGCACC GTCCGGAAGA 2521 GGCGGATCTC ACAAAAGACC AGTTCCAAAC CCGCCAAGAA GAAGAAGAAG TAGGCCTCTA 2581 GAGCGGCCGC CACCGCGGTG GCTAGAGGGC CCGTTTGTAC CCCCGTGGAA CCTTTGTGGC 2641 TCCTCTGCCG ATCCATACTG CGGAACTCCT AGCCGCTTGT TTTGCTCGCA GCCCGTTTCC 2701 ATGGCTGCTA GGCTGTACTG CCAACTGGAT CCTTCGCGGG ACGTCCTTTG TTTACGTCCC 2761 GTCGGCGCTG AATCCCGCGG ACGACCCCTC GCGGGGCCGC TTGGGACTCT CTCGTCCCCT 2821 TCTCCGTCTG CCGTTCCAGC CGACCACGGG GCGCACCTCT CTTTACGCGG TCTCCCCGTC 2881 TGTGCCTTCT CATCTGCCGG TCCGTGTGCA CTTCGCTTCA CCTCTGCACG TTGCATGGAG 2941 ACCACCGTGA ACGCCCATCA GATCCTGCCC AAGGTCTTAC ATAAGAGGAC TCTTGGACTC 3001 CCAGCAATGT CAACGACCGA CCTTGAGGCC TACTTCAAAG ACTGTGTGTT TAAGGACTGG 3061 GAGGAGCTGG GGGAGGAGAT TAGGTTAAAG GTCTTTGTAT TAGGAGGCTG TAGGCATAAA 3121 TTGGTCTGCG GGTTCGAAAT CGATAAGCTG ATCCGTCGAC CCGGGCGGCC GCTTCGAGCA 3181 GACATGATAA GATACATTGA TGAGTTTGGA CAAACCACAA CTAGAATGCA GTGAAAAAAA 3241 TGCTTTATTT GTGAAATTTG TGATGCTATT GCTTTATTTG TAACCATTAT AAGCTGCAAT 3301 AAACAAGTTA ACAACAACAA TTGCATTCAT TTTATGTTTC AGGTTCAGGG GGAGATGTGG 3361 GAGGTTTTTT AAAGCAAGTA AAACCTCTAC AAATGTGGTA AAATCGATAA GGATCCGGGC 3421 TGGCGTAATA GCGAAGAGGC CCGCACCGAT CGCCCTTCCC AACAGTTGCG CAGCCTGAAT 3481 GGCGAATGGA CGCGCCCTGT AGCGGCGCAT TAAGCGCGGC GGGTGTGGTG GTTACGCGCA 3541 GCGTGACCGC TACACTTGCC AGCGCCCTAG CGCCCGCTCC TTTCGCTTTC TTCCCTTCCT 3601 TTCTCGCCAC GTTCGCCGGC TTTCCCCGTC AAGCTCTAAA TCGGGGGCTC CCTTTAGGGT 3661 TCCGATTTAG AGCTTTACGG CACCTCGACC GCAAAAAACT TGATTTGGGT GATGGTTCAC 3721 GTAGTGGGCC ATCGCCCTGA TAGACGGTTT TTCGCCCTTT GACGTTGGAG TCCACGTTCT 3781 TTAATAGTGG ACTCTTGTTC CAAACTGGAA CAACACTCAA CCCTATCTCG GTCTATTCTT 3841 TTGATTTATA AGGGATTTTG CCGATTTCGG CCTATTGGTT AAAAAATGAG CTGATTTAAC 3901 AAATATTTAA CGCGAATTTT AACAAAATAT TAACGTTTAC AATTTCGCCT GATGCGGTAT 3961 TTTCTCCTTA CGCATCTGTG CGGTATTTCA CACCGCATAT GGTGCACTCT CAGTACAATC 4021 TGCTCTGATG CCGCATAGTT AAGCCAGCCC CGACACCCGC CAACACCCGC TGACGCGCCC 4081 TGACGGGCTT GTCTGCTCCC GGCATCCGCT TACAGACAAG CTGTGACCGT CTCCGGGAGC 4141 TGCATGTGTC AGAGGTTTTC ACCGTCATCA CCGAAACGCG CGAGACGAAA GGGCCTCGTG 4201 ATACGCCTAT TTTTATAGGT TAATGTCATG ATAATAATGG TTTCTTAGAC GTCAGGTGGC 4261 ACTTTTCGGG GAAATGTGCG CGGAACCCCT ATTTGTTTAT TTTTCTAAAT ACATTCAAAT 4321 ATGTATCCGC TCATGAGACA ATAACCCTGA TAAATGCTTC AATAATATTG AAAAAGGAAG 4381 AGTATGAGTA TTCAACATTT CCGTGTCGCC CTTATTCCCT TTTTTGCGGC ATTTTGCCTT 4441 CCTGTTTTTG CTCACCCAGA AACGCTGGTG AAAGTAAAAG ATGCTGAAGA TCAGTTGGGT 4501 GCACGAGTGG GTTACATCGA ACTGGATCTC AACAGCGGTA AGATCCTTGA GAGTTTTCGC 4561 CCCGAAGAAC GTTTTCCAAT GATGAGCACT TTTAAAGTTC TGCTATGTGG CGCGGTATTA 4621 TCCCGTATTG ACGCCGGGCA AGAGCAACTC GGTCGCCGCA TACACTATTC TCAGAATGAC 4681 TTGGTTGAGT ACTCACCAGT CACAGAAAAG CATCTTACGG ATGGCATGAC AGTAAGAGAA 4741 TTATGCAGTG CTGCCATAAC CATGAGTGAT AACACTGCGG CCAACTTACT TCTGACAACG 4801 ATCGGAGGAC CGAAGGAGCT AACCGCTTTT TTGCACAACA TGGGGGATCA TGTAACTCGC 4861 CTTGATCGTT GGGAACCGGA GCTGAATGAA GCCATACCAA ACGACGAGCG TGACACCACG 4921 ATGCCTGTAG CAATGGCAAC AACGTTGCGC AAACTATTAA CTGGCGAACT ACTTACTCTA 4981 GCTTCCCGGC AACAATTAAT AGACTGGATG GAGGCGGATA AAGTTGCAGG ACCACTTCTG 5041 CGCTCGGCCC TTCCGGCTGG CTGGTTTATT GCTGATAAAT CTGGAGCCGG TGAGCGTGGG 5101 TCTCGCGGTA TCATTGCAGC ACTGGGGCCA GATGGTAAGC CCTCCCGTAT CGTAGTTATC 5161 TACACGACGG GGAGTCAGGC AACTATGGAT GAACGAAATA GACAGATCGC TGAGATAGGT 5221 GCCTCACTGA TTAAGCATTG GTAACTGTCA GACCAAGTTT ACTCATATAT ACTTTAGATT 5281 GATTTAAAAC TTCATTTTTA ATTTAAAAGG ATCTAGGTGA AGATCCTTTT TGATAATCTC 5341 ATGACCAAAA TCCCTTAACG TGAGTTTTCG TTCCACTGAG CGTCAGACCC CGTAGAAAAG 5401 ATCAAAGGAT CTTCTTGAGA TCCTTTTTTT CTGCGCGTAA TCTGCTGCTT GCAAACAAAA 5461 AAACCACCGC TACCAGCGGT GGTTTGTTTG CCGGATCAAG AGCTACCAAC TCTTTTTCCG 5521 AAGGTAACTG GCTTCAGCAG AGCGCAGATA CCAAATACTG TCCTTCTAGT GTAGCCGTAG 5581 TTAGGCCACC ACTTCAAGAA CTCTGTAGCA CCGCCTACAT ACCTCGCTCT GCTAATCCTG 5641 TTACCAGTGG CTGCTGCCAG TGGCGATAAG TCGTGTCTTA CCGGGTTGGA CTCAAGACGA 5701 TAGTTACCGG ATAAGGCGCA GCGGTCGGGC TGAACGGGGG GTTCGTGCAC ACAGCCCAGC 5761 TTGGAGCGAA CGACCTACAC CGAACTGAGA TACCTACAGC GTGAGCTATG AGAAAGCGCC 5821 ACGCTTCCCG AAGGGAGAAA GGCGGACAGG TATCCGGTAA GCGGCAGGGT CGGAACAGGA 5881 GAGCGCACGA GGGAGCTTCC AGGGGGAAAC GCCTGGTATC TTTATAGTCC TGTCGGGTTT 5941 CGCCACCTCT GACTTGAGCG TCGATTTTTG TGATGCTCGT CAGGGGGGCG GAGCCTATGG 6001 AAAAACGCCA GCAACGCGGC CTTTTTACGG TTCCTGGCCT TTTGCTGGCC TTTTGCTCAC 6061 ATGGCTCGAC AGATCT //