LOCUS P16ML1L2.T 6388 BP DS-DNA CIRCULAR SYN 17-MAY-2003 DEFINITION - ACCESSION - KEYWORDS - SOURCE - FEATURES Location/Qualifiers misc_RNA complement(>4..12) /note="SV40 minor late 19S RNA" promoter <4..>348 /note="SV40 promoter (∆SELP)" enhancer 26..168 /note="SV40 enhancer elements" misc_feature 173..236 /note="SV40 21bp repeats" rep_origin 193..>328 /note="SV40 Ori" mRNA 242..248 /note="early-late transcription startpoints" mutation 262..262 /note="G->A kills SELP ATG" mRNA 282..288 /note="early-early transcription start points" misc_feature 390..449 /note="SV40 homology" intron 417..511 /note="SV40 late intron" misc_feature 460..546 /note="SV40 homology" CDS 493..573 /note="upstream ORF" CDS 581..>2002 /note="Müller's L2" polyA_signal 2056..>2277 /note="SV40 Late PolyA" mutation 2347..2347 /note="missing A (hëLsf sequencing)" promoter <2368..>2605 /note="hEF1alpha promoter core" 5'UTR 2613..2879 /note="HTLV-1 R-U5" mutation 2895..2895 /note="missing GG" CDS 2911..>4428 /note="Müller's HPV16 L1" mutation 3433..3433 /note="T->A makes Cys175->Ser" mutation 4434..4434 /note="G missing" polyA_signal <4477..5139 /note="hEF1a polyA signal" rep_origin 5140..5873 /note="MB1 Ori" promoter 5874..5960 /note="EM7 promoter" CDS 5961..6335 /note="ShBle (ZeoR)" terminator 6336..6388 /note="terminator (rpmB/G)" BASE COUNT 1519 A 1947 C 1683 G 1239 T 0 OTHER ORIGIN - 1 CCCCTGTGGA ATGTGTGTCA GTTAGGGTGT GGAAAGTCCC CAGGCTCCCC AGCAGGCAGA 61 AGTATGCAAA GCATGCATCT CAATTAGTCA GCAACCAGGT GTGGAAAGTC CCCAGGCTCC 121 CCAGCAGGCA GAAGTATGCA AAGCATGCAT CTCAATTAGT CAGCAACCAT AGTCCCGCCC 181 CTAACTCCGC CCATCCCGCC CCTAACTCCG CCCAGTTCCG CCCATTCTCC GCCCCATGGC 241 TGACTAATTT TTTTTATTTA TACAGAGGCC GAGGCCGCCT CGGCCTCTGA GCTATTCCAG 301 AAGTAGTGAG GAGGCTTTTT TGGAGGCCTA GGCTTTTGCA AAAAGCTTGA TTGGGATCCA 361 CCGGACTCTA GAGGATCCGG TACTCGAGGA ACTGAAAAAC CAGAAAGTTA ACTGGTAAGT 421 TTAGTCTTTT TGTCTTTTAT TTCAGGTCCC GGATCCGGTG GTGGTGCAAA TCAAAGAACT 481 GCTCCTCAGT GGATGTTGCC TTTACTTCTA GGCCTGTACG GAAGTGTTAC TTCTGCTCTA 541 AAAGCTGCGG AATTGTACCC GCGGCCGCTC TAGAGCCACC ATGAGGCACA AGAGGAGCGC 601 CAAGAGGACC AAGAGGGCCA GCGCCACCCA GCTGTACAAG ACCTGCAAGC AGGCCGGCAC 661 CTGCCCCCCC GACATCATCC CCAAGGTGGA GGGCAAGACC ATCGCCGACC AGATCCTGCA 721 GTACGGCAGC ATGGGCGTGT TCTTCGGCGG CCTGGGCATC GGCACCGGCA GCGGCACCGG 781 CGGCAGGACC GGCTACATCC CCCTGGGCAC CAGGCCCCCC ACCGCCACCG ACACCCTGGC 841 CCCCGTGAGG CCCCCCCTGA CCGTGGACCC CGTGGGCCCC AGCGACCCCA GCATCGTGAG 901 CCTGGTGGAG GAGACCAGCT TCATCGACGC CGGCGCCCCC ACCAGCGTGC CCAGCATCCC 961 CCCCGACGTG AGCGGCTTCA GCATCACCAC CAGCACCGAC ACCACCCCCG CCATCCTGGA 1021 CATCAACAAC ACCGTGACCA CCGTGACCAC CCACAACAAC CCCACCTTCA CCGACCCCAG 1081 CGTGCTGCAG CCCCCCACCC CCGCCGAGAC CGGCGGCCAC TTCACCCTGA GCAGCAGCAC 1141 CATCAGCACC CACAACTACG AGGAGATCCC CATGGACACC TTCATCGTGA GCACCAACCC 1201 CAACACCGTG ACCAGCAGCA CCCCCATCCC CGGCAGCAGG CCCGTGGCCA GGCTGGGCCT 1261 GTACAGCAGG ACCACCCAGC AGGTGAAGGT GGTGGACCCC GCCTTCGTGA CCACCCCCAC 1321 CAAGCTGATC ACCTACGACA ACCCCGCCTA CGAGGGCATC GACGTGGACA ACACCCTGTA 1381 CTTCAGCAGC AACGACAACA GCATCAACAT CGCCCCCGAC CCCGACTTCC TGGACATCGT 1441 GGCCCTGCAC AGGCCCGCCC TGACCAGCAG GAGGACCGGC ATCAGGTACA GCAGGATCGG 1501 CAACAAGCAG ACCCTGAGGA CCAGGAGCGG CAAGAGCATC GGCGCCAAGG TGCACTACTA 1561 CTACGACCTG AGCACCATCG ACCCCGCCGA GGAGATCGAG CTGCAGACCA TCACCCCCAG 1621 CACCTACACC ACCACCAGCC ACGCCGCCAG CCCCACCAGC ATCAACAACG GCCTGTACGA 1681 CATCTACGCC GACGACTTCA TCACCGACAC CAGCACCACC CCCGTGCCCA GCGTGCCCAG 1741 CACCAGCCTG AGCGGCTACA TCCCCGCCAA CACCACCATC CCCTTCGGTG GCGCCTACAA 1801 CATCCCCCTG GTGAGCGGCC CCGACATCCC CATCAACATC ACCGACCAGG CCCCCAGCCT 1861 GATCCCCATC GTGCCCGGCA GCCCCCAGTA CACCATCATC GCCGACGCCG GCGACTTCTA 1921 CCTGCACCCC AGCTACTACA TGCTGAGGAA GAGGAGGAAG AGGCTGCCCT ACTTCTTCAG 1981 CGACGTGAGC CTGGCCGCCT GAAAGCTTTT TGAATTCTTT GGATCCACTA GTGTCGACTA 2041 GAGGGCCGCT TCGAGCAGAC ATGATAAGAT ACATTGATGA GTTTGGACAA ACCACAACTA 2101 GAATGCAGTG AAAAAAATGC TTTATTTGTG AAATTTGTGA TGCTATTGCT TTATTTGTAA 2161 CCATTATAAG CTGCAATAAA CAAGTTAACA ACAACAATTG CATTCATTTT ATGTTTCAGG 2221 TTCAGGGGGA GGTGTGGGAG GTTTTTTAAA GCAAGTAAAA CCTCTACAAA TGTGGTAAAA 2281 TCGATAAGGA TCCGGGCTGG CGTAATAGCG AAGAGGCCCG CACCGATCGC CCTTCCCAAC 2341 AGTTGCGGTG GAGAAGAGCA TGCGTGAGGC TCCGGTGCCC GTCAGTGGGC AGAGCGCACA 2401 TCGCCCACAG TCCCCGAGAA GTTGGGGGGA GGGGTCGGCA ATTGAACCGG TGCCTAGAGA 2461 AGGTGGCGCG GGGTAAACTG GGAAAGTGAT GTCGTGTACT GGCTCCGCCT TTTTCCCGAG 2521 GGTGGGGGAG AACCGTATAT AAGTGCAGTA GTCGCCGTGA ACGTTCTTTT TCGCAACGGG 2581 TTTGCCGCCA GAACACAGCT GAAGCTTCGA GGGGCTCGCA TCTCTCCTTC ACGCGCCCGC 2641 CGCCCTACCT GAGGCCGCCA TCCACGCCGG TTGAGTCGCG TTCTGCCGCC TCCCGCCTGT 2701 GGTGCCTCCT GAACTGCGTC CGCCGTCTAG GTAAGTTTAA AGCTCAGGTC GAGACCGGGC 2761 CTTTGTCCGG CGCTCCCTTG GAGCCTACCT AGACTCAGCC GGCTCTCCAC GCTTTGCCTG 2821 ACCCTGCTTG CTCAACTCTA CGTCTTTGTT TCGTTTTCTG TTCTGCGCCG TTACAGATCC 2881 AAGCTGTGAC CGGCCCGCTC TAGAGCCACC ATGAGCCTGT GGCTGCCCAG CGAGGCCACC 2941 GTGTACCTGC CCCCCGTGCC CGTGAGCAAG GTGGTGAGCA CCGACGAGTA CGTGGCCAGG 3001 ACCAACATCT ACTACCACGC CGGCACCAGC AGGCTGCTGG CCGTGGGCCA CCCCTACTTC 3061 CCCATCAAGA AGCCCAACAA CAACAAGATC CTGGTGCCCA AGGTGAGCGG CCTGCAGTAC 3121 AGGGTGTTCA GGATCCACCT GCCCGACCCC AACAAGTTCG GCTTCCCCGA CACCAGCTTC 3181 TACAACCCCG ACACCCAGAG GCTGGTGTGG GCCTGCGTGG GCGTGGAGGT GGGCAGGGGC 3241 CAGCCCCTGG GCGTGGGCAT CAGCGGCCAC CCCCTGCTGA ACAAGCTGGA CGACACCGAG 3301 AACGCCAGCG CCTACGCCGC CAACGCCGGC GTGGACAACA GGGAGTGCAT CAGCATGGAC 3361 TACAAGCAGA CCCAGCTGTG CCTGATCGGC TGCAAGCCCC CCATCGGCGA GCACTGGGGC 3421 AAGGGCAGCC CCAGCACCAA CGTGGCCGTG AACCCCGGCG ACTGCCCCCC CCTGGAGCTG 3481 ATCAACACCG TGATCCAGGA CGGCGACATG GTGGACACCG GCTTCGGCGC CATGGACTTC 3541 ACCACCCTGC AGGCCAACAA GAGCGAGGTG CCCCTGGACA TCTGCACCAG CATCTGCAAG 3601 TACCCCGACT ACATCAAGAT GGTGAGCGAG CCCTACGGCG ACAGCCTGTT CTTCTACCTG 3661 AGGAGGGAGC AGATGTTCGT GAGGCACCTG TTCAACAGGG CCGGCGCCGT GGGCGAGAAC 3721 GTGCCCGACG ACCTGTACAT CAAGGGCAGC GGCAGCACCG CCAACCTGGC CAGCAGCAAC 3781 TACTTCCCCA CCCCCAGCGG CAGCATGGTG ACCAGCGACG CCCAGATCTT CAACAAGCCC 3841 TACTGGCTGC AGAGGGCCCA GGGCCACAAC AACGGCATCT GCTGGGGCAA CCAGCTGTTC 3901 GTGACCGTGG TGGACACCAC CAGGAGCACC AACATGAGCC TGTGCGCCGC CATCAGCACC 3961 AGCGAGACCA CCTACAAGAA CACCAACTTC AAGGAGTACC TGAGGCACGG CGAGGAGTAC 4021 GACCTGCAGT TCATCTTCCA GCTGTGCAAG ATCACCCTGA CCGCCGACGT GATGACCTAC 4081 ATCCACAGCA TGAACAGCAC CATCCTGGAG GACTGGAACT TCGGCCTGCA GCCCCCCCCC 4141 GGCGGCACCC TGGAGGACAC CTACAGGTTC GTGACCAGCC AGGCCATCGC CTGCCAGAAG 4201 CACACCCCCC CCGCCCCCAA GGAGGACCCC CTGAAGAAGT ACACCTTCTG GGAGGTGAAC 4261 CTGAAGGAGA AGTTCAGCGC CGACCTGGAC CAGTTCCCCC TGGGCAGGAA GTTCCTGCTG 4321 CAGGCCGGCC TGAAGGCCAA GCCCAAGTTC ACCCTGGGCA AGAGGAAGGC CACCCCCACC 4381 ACCAGCAGCA CCAGCACCAC CGCCAAGAGG AAGAAGAGGA AGCTGTGAAA GCTACCCACG 4441 GCCGAATAGC CGTGAGCCGG AATCCTGCAC GCTAGCATTA TCCCTAATAC CTGCCACCCC 4501 ACTCTTAATC AGTGGTGGAA GAACGGTCTC AGAACTGTTT GTTTCAATTG GCCATTTAAG 4561 TTTAGTAGTA AAAGACTGGT TAATGATAAC AATGCATCGT AAAACCTTCA GAAGGAAAGG 4621 AGAATGTTTT GTGGACCACT TTGGTTTTCT TTTTTGCGTG TGGCAGTTTT AAGTTATTAG 4681 TTTTTAAAAT CAGTACTTTT TAATGGAAAC AACTTGACCA AAAATTTGTC ACAGAATTTT 4741 GAGACCCATT AAAAAAGTTA AATGAGAAAC CTGTGTGTTC CTTTGGTCAA CACCGAGACA 4801 TTTAGGTGAA AGACATCTAA TTCTGGTTTT ACGAATCTGG AAACTTCTTG AAAATGTAAT 4861 TCTTGAGTTA ACACTTCTGG GTGGAGAATA GGGTTGTTTT CCCCCCACAT AATTGGAAGG 4921 GGAAGGAATA TCATTTAAAG CTATGGGAGG GTTTCTTTGA TTACAACACT GGAGAGAAAT 4981 GCAGCATGTT GCTGATTGCC TGTCACTAAA ACAGGCCAAA AACTGAGTCC TTGGGTTGCA 5041 TAGAAAGCTT CATGTTGCTA AACCAATGTT AAGTGAATCT TTGGAAACAA AATGTTTCCA 5101 AATTACTGGG ATGTGCATGT TGAAACGTGG GTTAATTAAC TAGCCATGAC CAAAATCCCT 5161 TAACGTGAGT TTTCGTTCCA CTGAGCGTCA GACCCCGTAG AAAAGATCAA AGGATCTTCT 5221 TGAGATCCTT TTTTTCTGCG CGTAATCTGC TGCTTGCAAA CAAAAAAACC ACCGCTACCA 5281 GCGGTGGTTT GTTTGCCGGA TCAAGAGCTA CCAACTCTTT TTCCGAAGGT AACTGGCTTC 5341 AGCAGAGCGC AGATACCAAA TACTGTTCTT CTAGTGTAGC CGTAGTTAGG CCACCACTTC 5401 AAGAACTCTG TAGCACCGCC TACATACCTC GCTCTGCTAA TCCTGTTACC AGTGGCTGCT 5461 GCCAGTGGCG ATAAGTCGTG TCTTACCGGG TTGGACTCAA GACGATAGTT ACCGGATAAG 5521 GCGCAGCGGT CGGGCTGAAC GGGGGGTTCG TGCACACAGC CCAGCTTGGA GCGAACGACC 5581 TACACCGAAC TGAGATACCT ACAGCGTGAG CTATGAGAAA GCGCCACGCT TCCCGAAGGG 5641 AGAAAGGCGG ACAGGTATCC GGTAAGCGGC AGGGTCGGAA CAGGAGAGCG CACGAGGGAG 5701 CTTCCAGGGG GAAACGCCTG GTATCTTTAT AGTCCTGTCG GGTTTCGCCA CCTCTGACTT 5761 GAGCGTCGAT TTTTGTGATG CTCGTCAGGG GGGCGGAGCC TATGGAAAAA CGCCAGCAAC 5821 GCGGCCTTTT TACGGTTCCT GGCCTTTTGC TGGCCTTTTG CTCACATGTT CTTAATTAAA 5881 TTTTTCAAAA GTAGTTGACA ATTAATCATC GGCATAGTAT ATCGGCATAG TATAATACGA 5941 CTCACTATAG GAGGGCCATC ATGGCCAAGT TGACCAGTGC TGTCCCAGTG CTCACAGCCA 6001 GGGATGTGGC TGGAGCTGTT GAGTTCTGGA CTGACAGGTT GGGGTTCTCC AGAGATTTTG 6061 TGGAGGATGA CTTTGCAGGT GTGGTCAGAG ATGATGTCAC CCTGTTCATC TCAGCAGTCC 6121 AGGACCAGGT GGTGCCTGAC AACACCCTGG CTTGGGTGTG GGTGAGAGGA CTGGATGAGC 6181 TGTATGCTGA GTGGAGTGAG GTGGTCTCCA CCAACTTCAG GGATGCCAGT GGCCCTGCCA 6241 TGACAGAGAT TGGAGAGCAG CCCTGGGGGA GAGAGTTTGC CCTGAGAGAC CCAGCAGGCA 6301 ACTGTGTGCA CTTTGTGGCA GAGGAGCAGG ACTGAGGATA AGAATTGTAA CAAAAAACCC 6361 CGCCCCGGCG GGGTTTTTTG TTAATTAA //